PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS73030.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

TCP

Protein Properties

Length: 156aa MW: 18043.5 Da PI: 9.9195

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS73030.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	124.2	1.4e-38	14	126	3	117
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.ssssa..seceaesssssasnsssg.......... 88 gkkdrhski T++g RdRR+Rls++ a++fFdLqd+LG+dk+sktieWL+ ++k+ai e + s +++ sece+ +++s ++ ++s+ EPS73030.1 14 GKKDRHSKIRTAQGVRDRRMRLSLSAARKFFDLQDMLGYDKASKTIEWLFSKSKRAIEEVMMMtSKNPKseSECED-DDVSGVE-ENSNeylnfspcks 110 79*********************************************************99884333332355532.2233333.22222355755533 PP TCP 89 .kaaksaakskksqksaasalnlakesrak 117 +++++k ++k rak EPS73030.1 111 eT---TEEEKK-----------KKKTPRAK 126 21...211111...........11122222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	7.9E-39	14	127	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	33.83	15	73	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048831	Biological Process	regulation of shoot system development

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence Send to blast
QQLAVHPRRK KMGGKKDRHS KIRTAQGVRD RRMRLSLSAA RKFFDLQDML GYDKASKTIE 60 WLFSKSKRAI EEVMMMTSKN PKSESECEDD DVSGVEENSN EYLNFSPCKS ETTEEEKKKK 120 KTPRAKSRSS PNLKDLVIFE EINHCPSTEN RFPEVG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	3e-15	20	73	1	54	Putative transcription factor PCF6
5zkt_B	3e-15	20	73	1	54	Putative transcription factor PCF6
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020552305.1	1e-32	transcription factor TCP12-like
TrEMBL	S8D0W7	1e-111	S8D0W7_9LAMI; Cycloidea-like 3a protein (Fragment)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2436	23	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67260.2	1e-27	TCP family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]