PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS73060.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

GRAS

Protein Properties

Length: 492aa MW: 54269.2 Da PI: 4.4229

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS73060.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	243.3	1e-74	125	492	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 v+ L++ Ae+++ ++l+ + +L rl+e+ +sp+g+p+qR+a+yf+eA+++ l+ + + + +++ +++ +++++a+++fs +sPi+ fs +ta EPS73060.1 125 VDDLIRLAECFDGDSLQVREVILGRLNERlRSPAGKPLQRAAFYFKEAIQSILTAMAPAVR-----RAAGSSEIVQTIKAQNIFSSISPIVMFSGFTAT 218 678***********************99*********************555554.....3444456899******************* PP GRAS 100 qaIleavege...ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191 qa+lea++g +vH++Dfd++ G++Wpa+++++a+++ + pp +Ri +v+++e + e + ++++L++fA l+v++e++++ ++++e ++ EPS73060.1 219 QALLEAIDGGggaMQVHVVDFDVGFGGHWPAFIKEMAEKAnsekNAPPLIRISAVVAEE--YAAESNLVRQNLTQFAGDLNVRLEIDFVSVRSFEYQSF 315 ****9877799*******************997776779******66..99999*******************999*** PP GRAS 192 eeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerflealeyysalfdsl.eaklpres..eerik 284 +++++ gE+laV l+ +++r + +L+ +++lsP+ vv v+ e +++s + +++ le+ysal++s+ +a+l + ++++ EPS73060.1 316 KAIKFTGgGEKLAVLLSPSIFRRI---------GTGFLNDLRRLSPTTVVYVDAEGHSgyDTPSRRHAVINGLEFYSALLESVeAANLIGAGgwDWMRR 405 *999*********998.........368***************6653388889999***********655654444689 PP GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee..sgslvlgWkdrpLvsvSaWr 374 +E ++l ++i ++v g++ + re+l +aG++p+ ls++a+ qa++llr+v+ g+++ ++ +++++l+W++rpL +SaW+ EPS73060.1 406 IETFVLYPKILEAVEGIGRR-----GGATVVREALAAAGLRPAVLSQFAEFQAECLLRRVQISGFHLVKRleDEAMLLCWHNRPLAEMSAWQ 492 *********9888887.....6667779*******************************9776689999************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	35.238	98	470	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.5E-72	125	492	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 492 aa Download sequence Send to blast
EPKSVLELKG SPKLDSDRRF EVETLQLEDH LEVDDWGSCW MGELGLLKDD EEEEEEEEDD 60 DSGFSKCFPA ENRQIVYEFP ASFDSEQFPG ADFEFSPGYG GAVGSLEGFA GDLVAGNWNV 120 GLDYVDDLIR LAECFDGDSL QVREVILGRL NERLRSPAGK PLQRAAFYFK EAIQSILTAM 180 APAVRRAAGS SEIVQTIKAQ NIFSSISPIV MFSGFTATQA LLEAIDGGGG AMQVHVVDFD 240 VGFGGHWPAF IKEMAEKANS EKNAPPLIRI SAVVAEEYAA ESNLVRQNLT QFAGDLNVRL 300 EIDFVSVRSF EYQSFKAIKF TGGGEKLAVL LSPSIFRRIG TGFLNDLRRL SPTTVVYVDA 360 EGHSGYDTPS RRHAVINGLE FYSALLESVE AANLIGAGGW DWMRRIETFV LYPKILEAVE 420 GIGRRGGATV VREALAAAGL RPAVLSQFAE FQAECLLRRV QISGFHLVKR LEDEAMLLCW 480 HNRPLAEMSA WQ

Sequence ? help Back to Top

Protein Sequence Length: 492 aa Download sequence Send to blast

EPKSVLELKG SPKLDSDRRF EVETLQLEDH LEVDDWGSCW MGELGLLKDD EEEEEEEEDD  60
DSGFSKCFPA ENRQIVYEFP ASFDSEQFPG ADFEFSPGYG GAVGSLEGFA GDLVAGNWNV  120
GLDYVDDLIR LAECFDGDSL QVREVILGRL NERLRSPAGK PLQRAAFYFK EAIQSILTAM  180
APAVRRAAGS SEIVQTIKAQ NIFSSISPIV MFSGFTATQA LLEAIDGGGG AMQVHVVDFD  240
VGFGGHWPAF IKEMAEKANS EKNAPPLIRI SAVVAEEYAA ESNLVRQNLT QFAGDLNVRL  300
EIDFVSVRSF EYQSFKAIKF TGGGEKLAVL LSPSIFRRIG TGFLNDLRRL SPTTVVYVDA  360
EGHSGYDTPS RRHAVINGLE FYSALLESVE AANLIGAGGW DWMRRIETFV LYPKILEAVE  420
GIGRRGGATV VREALAAAGL RPAVLSQFAE FQAECLLRRV QISGFHLVKR LEDEAMLLCW  480
HNRPLAEMSA WQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	1e-16	130	491	24	377	Protein SCARECROW
5b3h_D	1e-16	130	491	24	377	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012847887.1	0.0	PREDICTED: scarecrow-like protein 15
TrEMBL	S8D0Z4	0.0	S8D0Z4_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.L00296.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8305	22	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36710.1	8e-97	GRAS family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]