PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS73134.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

NF-YA

Protein Properties

Length: 108aa MW: 12553.4 Da PI: 10.9976

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS73134.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	93.6	2.4e-29	36	92	3	58
CBFB_NFYA 3 plYVNaKQyqrIlkRRqkRaklee..ekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 p+YVNaKQy++I++RR+kRa +e ekk ksrkpylh SRh hA+rRpRg+gGrF EPS73134.1 36 PVYVNAKQYNGIMRRRKKRAAAEMmhEKKP-PKSRKPYLHLSRHLHAMRRPRGNGGRF 92 9********************9856666.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	2.2E-27	32	95	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	32.94	33	95	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.5E-26	36	92	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.5E-21	36	58	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.5E-21	69	92	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009567	Biological Process	double fertilization forming a zygote and endosperm
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 108 aa Download sequence Send to blast
YPPEEQYYGI YSQYATQMMN PNRIMLPLNV SGEGGPVYVN AKQYNGIMRR RKKRAAAEMM 60 HEKKPPKSRK PYLHLSRHLH AMRRPRGNGG RFINTKSDDS SSRSRKEG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	2e-16	36	100	4	66	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	48	53	RRRKKR

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011094246.1	6e-38	nuclear transcription factor Y subunit A-10
Refseq	XP_020553756.1	6e-38	nuclear transcription factor Y subunit A-10
Refseq	XP_020553757.1	6e-38	nuclear transcription factor Y subunit A-10
Swissprot	Q9M9X4	3e-31	NFYA2_ARATH; Nuclear transcription factor Y subunit A-2
TrEMBL	S8D035	4e-73	S8D035_9LAMI; Uncharacterized protein (Fragment)
STRING	XP_006481615.1	3e-35	(Citrus sinensis)
STRING	XP_006430046.1	3e-35	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3706	23	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G05690.1	2e-26	nuclear factor Y, subunit A2

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Nasim Z,Fahim M,Ahn JH Possible Role of MADS AFFECTING FLOWERING 3 and B-BOX DOMAIN PROTEIN 19 in Flowering Time Regulation of Arabidopsis Mutants with Defects in Nonsense-Mediated mRNA Decay. Front Plant Sci, 2017. 8: p. 191 [PMID:28261246] Zhang M,Hu X,Zhu M,Xu M,Wang L Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis. Sci Rep, 2017. 7(1): p. 1395 [PMID:28469131]