PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS73182.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

G2-like

Protein Properties

Length: 170aa MW: 18791.3 Da PI: 9.891

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS73182.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.4	1.4e-32	24	79	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ.kYRl 55 k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQ kYRl EPS73182.1 24 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRIMGVQGLTIYHVKSHLQqKYRL 79 79**********************************************6498 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.38	21	81	IPR017930	Myb domain
SuperFamily	SSF46689	4.84E-16	23	79	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.8E-31	23	80	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.3E-24	24	80	IPR006447	Myb domain, plants
Pfam	PF00249	1.3E-8	26	75	IPR001005	SANT/Myb domain
Pfam	PF14379	1.3E-22	111	157	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence Send to blast
GACKMDPTLG SNSDNNNANN LASKQRLRWT HELHERFVDA VAQLGGPDRA TPKGVLRIMG 60 VQGLTIYHVK SHLQQKYRLA KYLPDSSSDG KNAGKKESGD ALSGLDTSSG MQITEALKLQ 120 MEVQKRLQEQ LEVQRQLQLR IEAQGKYLKK IIEEQQRLSG VLDPPTGSGI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-24	24	82	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-24	24	82	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-24	24	82	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-24	24	82	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010647085.1	1e-95	PREDICTED: myb family transcription factor PHL7 isoform X1
Refseq	XP_010647087.1	1e-95	PREDICTED: myb family transcription factor PHL7 isoform X1
Refseq	XP_017978582.1	2e-95	PREDICTED: myb family transcription factor PHL7
Refseq	XP_019074066.1	1e-95	PREDICTED: myb family transcription factor PHL7 isoform X1
Refseq	XP_021293640.1	2e-95	myb family transcription factor PHL7
Swissprot	Q9SJW0	2e-89	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	S8EKN7	1e-121	S8EKN7_9LAMI; Uncharacterized protein (Fragment)
STRING	VIT_00s0475g00040.t01	5e-95	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2796	24	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	1e-72	G2-like family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]