PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS73268.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family NAC
Protein Properties Length: 185aa    MW: 21091.1 Da    PI: 10.3924
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS73268.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM104.41.5e-32171571128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.vikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sgy 82 
                 lp+G++F+P+d +++ ++L+ +v+ +       +   + +i+++d    i++++P +Lp  ++ + +  +fF++ +k+y+tg+rk+r+++      + +
  EPS73268.1  17 LPAGVKFDPSDLQIL-QHLEDQVSCDAskihplI---HhFIPTIDgqkgICYTHPDKLP-GLRRDGQVRHFFHRPSKAYTTGTRKRRKVHtdvhggETR 110
                 799**********99.99****999885553321...233555545555**********.566677888******************744446555778 PP

         NAM  83 WkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                 W++tgk++++ s  ++++g kk+Lv+y   gr++k++kt+Wvmh+y+l
  EPS73268.1 111 WHKTGKTRPISS-ARKVKGYKKILVLYanYGRQKKPQKTNWVMHQYHL 157
                 ***********9.8899**********6668***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.37E-3610176IPR003441NAC domain
PROSITE profilePS5100531.42517176IPR003441NAC domain
PfamPF023657.6E-1418157IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
VTCTSCGHSF KLRNGGLPAG VKFDPSDLQI LQHLEDQVSC DASKIHPLIH HFIPTIDGQK  60
GICYTHPDKL PGLRRDGQVR HFFHRPSKAY TTGTRKRRKV HTDVHGGETR WHKTGKTRPI  120
SSARKVKGYK KILVLYANYG RQKKPQKTNW VMHQYHLGDN EEEKDGELVV SKVFYQTQPR  180
LCAAA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00459DAPTransfer from AT4G28500Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096365.11e-106NAC domain-containing protein 73
SwissprotO494596e-98NAC73_ARATH; NAC domain-containing protein 73
TrEMBLS8EBE81e-136S8EBE8_9LAMI; Uncharacterized protein (Fragment)
STRINGXP_009797428.11e-102(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28752454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-100NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  3. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  4. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]