PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS73345.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

Protein Properties

Length: 198aa MW: 22411.9 Da PI: 4.504

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS73345.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	44.8	2.3e-14	106	188	14	97
T-EE--HHH.HTT---..--SEEEEEETTS..-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 14 grlvlpkkfaeehggkkeesktltledesg..rsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 +rl +p+++++e g+k ++ + l+ ++g r W v+l+y +k +++ + ++GW++Fv++n++++gD+v F++ e + v+v+ EPS73345.1 106 RRLDIPRSCVNEAGIKR--TMNIHLKKTNGsrRLWPVTLTYtTKWPCS-LSSGGWRRFVRENDVNVGDTVRFTFRA-GENVMEVRVL 188 579*****9999885..5566666666666***886444444.6789******************754.5555666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd10017	1.88E-12	93	189	No hit	No description
PROSITE profile	PS50863	12.28	93	191	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	8.0E-16	94	189	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	6.67E-15	94	188	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	3.5E-8	95	191	IPR003340	B3 DNA binding domain
Pfam	PF02362	6.5E-11	105	187	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MVESSDFPRR SSFVVLINDG DFVDKLVSLF FTILFFLPSH TLSCCKRETT RSGNSPAIAI 60 SVSSEDEDDD DDGDDDGDDD EDSGQDRVIK GGFSFVKKMT EFCIGRRLDI PRSCVNEAGI 120 KRTMNIHLKK TNGSRRLWPV TLTYTTKWPC SLSSGGWRRF VRENDVNVGD TVRFTFRAGE 180 NVMEVRVLKT ADEEEEEE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	S8D1Y5	1e-141	S8D1Y5_9LAMI; Uncharacterized protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]