PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS73415.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family HD-ZIP
Protein Properties Length: 238aa    MW: 26127.5 Da    PI: 8.6027
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS73415.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.41e-17102157156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 rrk+ +++k q   Lee F++ ++++  +++ +A++l+Lt rqV vWFqNrRa+ k
  EPS73415.1 102 RRKKLRLSKAQSALLEESFARYSTLNPMQKQGIARELKLTPRQVEVWFQNRRARTK 157
                 79999*************************************************98 PP
2HD-ZIP_I/II109.91.8e-35103191189
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                  +kk+rlsk q++lLEesF + ++L+p +K+ +areL+l+prqv+vWFqnrRARtk+kq+E ++e Lk+ ++al++en+rL+ e ++L++
   EPS73415.1 103 RKKLRLSKAQSALLEESFARYSTLNPMQKQGIARELKLTPRQVEVWFQNRRARTKLKQTELNCELLKKFCNALADENRRLQMELKALKS 191
                  69************************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-1783157IPR009057Homeodomain-like
SuperFamilySSF466897.1E-1892160IPR009057Homeodomain-like
PROSITE profilePS5007117.299159IPR001356Homeobox domain
SMARTSM003891.1E-14101163IPR001356Homeobox domain
PfamPF000463.9E-15102157IPR001356Homeobox domain
CDDcd000863.35E-16102160No hitNo description
PROSITE patternPS000270134157IPR017970Homeobox, conserved site
SMARTSM003401.1E-13159199IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MDGSDDFCSL GLGFHHTYDV KRKKTPPLEP SLTLSISAEN CDVFRNPAAF DEAKSSADLH  60
RQDSVAASPS TGAKKDMEIG VSDETETETE KVSSDDGSNS NRRKKLRLSK AQSALLEESF  120
ARYSTLNPMQ KQGIARELKL TPRQVEVWFQ NRRARTKLKQ TELNCELLKK FCNALADENR  180
RLQMELKALK SAPPPAAAIC SSCETIAAAV NNPFAITLPT GGTRSILPVP PNHRPAAN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151159RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006363789.13e-61PREDICTED: homeobox-leucine zipper protein HAT22-like
SwissprotP466047e-43HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLS8D2241e-175S8D224_9LAMI; Uncharacterized protein
STRINGPGSC0003DMT4000551991e-60(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.13e-43HD-ZIP family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  4. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]