PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS73454.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

FAR1

Protein Properties

Length: 248aa MW: 28350.9 Da PI: 7.1993

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS73454.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	89.6	4.4e-28	89	176	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA+++GF +r+sk ++s+r+g+ + r fvC+keg+r +++++ k r+r+etr+gC+a++ v+k ++gkw+vtk+++eH+H+l+p EPS73454.1 89 FYNSYATRTGFLIRVSKLSRSRRDGSAIGRAFVCNKEGFRIPDRRE--KILRQRTETRVGCRAMILVRKLTSGKWVVTKFVKEHTHPLTP 176 ****************************************9988..999**********************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.1E-25	89	176	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MDFEIDDDVN GEVVGGSAGF GRIANGDDAF VGSSTDVVLR EELDIKVDDD SSERESFRLD 60 ELQVATYSSA MDEPYMGQEF DSEAAAHAFY NSYATRTGFL IRVSKLSRSR RDGSAIGRAF 120 VCNKEGFRIP DRREKILRQR TETRVGCRAM ILVRKLTSGK WVVTKFVKEH THPLTPGRGR 180 KVMIYDHYPN EQDRIRELSQ QLANEKKKVA TYKRHLETIF KHIEEHNESL GKKIQGIVNC 240 VREIESRE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011098324.1	1e-140	protein FAR1-RELATED SEQUENCE 5
TrEMBL	S8D119	0.0	S8D119_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.H01929.1.p	1e-132	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11568	23	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	7e-97	FAR1 family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]