PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS73579.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family LSD
Protein Properties Length: 171aa    MW: 17981.9 Da    PI: 9.1477
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS73579.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD142.88.7e-14729123
     zf-LSD1  1 CggCrtlLsYPrGApsVRCalCd 23
                C+gCr lL+YP GA++VRCalC 
  EPS73579.1  7 CSGCRSLLMYPSGATNVRCALCS 29
                **********************6 PP
2zf-LSD151.22e-164670125
     zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                CggCrtlL+YPrGA sVRC++C+tV
  EPS73579.1 46 CGGCRTLLMYPRGAASVRCSCCHTV 70
                ************************9 PP
3zf-LSD143.26.5e-1482105124
     zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdt 24 
                 Cg+C t+L+YP+G+psV+Ca+C+ 
  EPS73579.1  82 CGNCNTMLMYPYGSPSVKCAVCHY 105
                 **********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010536.3E-15432IPR005735Zinc finger, LSD1-type
Gene3DG3DSA:3.90.10.108.0E-46109No hitNo description
PfamPF069439.4E-12730IPR005735Zinc finger, LSD1-type
SuperFamilySSF486954.81E-521104IPR011031Multihaem cytochrome
TIGRFAMsTIGR010531.4E-174372IPR005735Zinc finger, LSD1-type
PfamPF069435.0E-144670IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.4E-1179107IPR005735Zinc finger, LSD1-type
PfamPF069439.7E-1382106IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000303Biological Processresponse to superoxide
GO:0001666Biological Processresponse to hypoxia
GO:0002240Biological Processresponse to molecule of oomycetes origin
GO:0009626Biological Processplant-type hypersensitive response
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0010104Biological Processregulation of ethylene-activated signaling pathway
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010602Biological Processregulation of 1-aminocyclopropane-1-carboxylate metabolic process
GO:0010618Biological Processaerenchyma formation
GO:0043069Biological Processnegative regulation of programmed cell death
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MQSQIVCSGC RSLLMYPSGA TNVRCALCSG VTTAPPPGME MAQLICGGCR TLLMYPRGAA  60
SVRCSCCHTV NLPPASIAHI NCGNCNTMLM YPYGSPSVKC AVCHYITNAN ANARRVAIPL  120
QRPNGSQSPT SSTVPTNSKN NRTVVVKNPM SVDKSGKLVS NVVVGITTDS R
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011069944.15e-86protein LSD1
SwissprotQ2QMB36e-67LOL2_ORYSJ; Protein LOL2
TrEMBLS8D1C51e-119S8D1C5_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.J01511.1.p7e-81(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16792467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.61e-66LSD family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  3. Wu J, et al.
    OsLOL1, a C2C2-type zinc finger protein, interacts with OsbZIP58 to promote seed germination through the modulation of gibberellin biosynthesis in Oryza sativa.
    Plant J., 2014. 80(6): p. 1118-30
    [PMID:25353370]