PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS73590.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

GRAS

Protein Properties

Length: 407aa MW: 46050.5 Da PI: 6.5114

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS73590.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	268.2	2.7e-82	19	405	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsv.selykalppsetsekn....sseelaalkl..fsevsPilkf 93 ++lL+ cA a++s++++laq++L+ l+++a dgd++qRla f++AL +r ++s+ s+l a++ + + +++++++l f++++P+++f EPS73590.1 19 ERLLTYCAAAIESNEATLAQQILWVLNNIAPADGDSNQRLAWGFLRALISRAVKSGnSKLLTAVADVLGDGVEaairRNHRFSIMELagFVDLTPWHRF 117 689***********************************************9954144555543333322223444334444444477****** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvl...va 183 ++ +aN a+ eaveg +Hi+D++ ++++Q p+L++ +a+R ++p +++T+ ++ + + ++ e+g++L++fA+ ++++ef+++ ++ EPS73590.1 118 GFTAANAAVIEAVEGYPVIHIVDLSSTHCMQIPTLIDDIATRMahSPPSLIKLTVAARTGGEipplRDFSYDELGWKLTNFARIRNLTLEFRPVpctHS 216 **************************************974455589*995555999999**********************88666 PP GRAS 184 krledleleeLrvkp....gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278 + +++l +++L+++p +Eal+ n+++ lh ++ e rd++L+ +sl+P+ vvvve+++d++s+++++r+ +a +y + +ds+e+ + EPS73590.1 217 DGFSSL-IHRLQIQPrdhrREALVLNCHMTLHCIP------ECLRDAFLRSARSLNPRAVVVVEEDVDLSSADLVQRVRSAYNYLWIQYDSMETVV--- 305 677777.999999999999***********9......44567*********************************************7... PP GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee.....sgslvlgWkdrpLvsvS 371 ++r +vE+e + ++i+nvva+eg r+er e +++W +r+++aG+++v+++e +++++k +l++++ ++g + eee + lvl+Wk+++++++S EPS73590.1 306 WRQREWVEAE-IWWKIENVVAQEGWGRVERAEAKGRWVQRMRKAGYGSVRFGEATVEEVKGMLEEHAaGWGLKREEEneeqgIHHLVLTWKGHNVLFAS 403 899***.****************************************************99999999774443345799******** PP GRAS 372 aW 373 aW EPS73590.1 404 AW 405 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	38.708	1	380	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.2E-80	19	405	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence Send to blast
RTPPWPDFPT SKSDADCMER LLTYCAAAIE SNEATLAQQI LWVLNNIAPA DGDSNQRLAW 60 GFLRALISRA VKSGNSKLLT AVADVLGDGV EAAIRRNHRF SIMELAGFVD LTPWHRFGFT 120 AANAAVIEAV EGYPVIHIVD LSSTHCMQIP TLIDDIATRM AHSPPSLIKL TVAARTGGEI 180 PPLRDFSYDE LGWKLTNFAR IRNLTLEFRP VPCTHSDGFS SLIHRLQIQP RDHRREALVL 240 NCHMTLHCIP ECLRDAFLRS ARSLNPRAVV VVEEDVDLSS ADLVQRVRSA YNYLWIQYDS 300 METVVWRQRE WVEAEIWWKI ENVVAQEGWG RVERAEAKGR WVQRMRKAGY GSVRFGEATV 360 EEVKGMLEEH AAGWGLKREE ENEEQGIHHL VLTWKGHNVL FASAWAP

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence Send to blast

RTPPWPDFPT SKSDADCMER LLTYCAAAIE SNEATLAQQI LWVLNNIAPA DGDSNQRLAW  60
GFLRALISRA VKSGNSKLLT AVADVLGDGV EAAIRRNHRF SIMELAGFVD LTPWHRFGFT  120
AANAAVIEAV EGYPVIHIVD LSSTHCMQIP TLIDDIATRM AHSPPSLIKL TVAARTGGEI  180
PPLRDFSYDE LGWKLTNFAR IRNLTLEFRP VPCTHSDGFS SLIHRLQIQP RDHRREALVL  240
NCHMTLHCIP ECLRDAFLRS ARSLNPRAVV VVEEDVDLSS ADLVQRVRSA YNYLWIQYDS  300
METVVWRQRE WVEAEIWWKI ENVVAQEGWG RVERAEAKGR WVQRMRKAGY GSVRFGEATV  360
EEVKGMLEEH AAGWGLKREE ENEEQGIHHL VLTWKGHNVL FASAWAP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_B	5e-45	1	407	19	420	Protein SHORT-ROOT
5b3h_E	5e-45	1	407	19	420	Protein SHORT-ROOT
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027074095.1	1e-179	scarecrow-like protein 32
Swissprot	Q9SN22	1e-160	SCL32_ARATH; Scarecrow-like protein 32
TrEMBL	S8D2G0	0.0	S8D2G0_9LAMI; Uncharacterized protein (Fragment)
STRING	XP_004303852.1	1e-173	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8781	24	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49950.1	1e-156	GRAS family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]