PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS73628.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family C3H
Protein Properties Length: 98aa    MW: 11437.9 Da    PI: 8.6134
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS73628.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.51.3e-09731126
                --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                ykt+lC  f+  G C+ Gd C+FaHg
  EPS73628.1  7 YKTRLCVQFRD-GNCRNGDLCTFAHG 31
                9******7777.*************9 PP
2zf-CCCH27.84.4e-096788425
                ---SGGGGTS--TTTTT-SS-S CS
     zf-CCCH  4 elCrffartGtCkyGdrCkFaH 25
                +lC+ ++ + +C+yG++C+F H
  EPS73628.1 67 KLCKKYFNGEECPYGEKCNFLH 88
                79******66************ PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.6E-14339IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-8437IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.633633IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-5632IPR000571Zinc finger, CCCH-type
PfamPF006428.1E-7731IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.24E-76291IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.4366391IPR000571Zinc finger, CCCH-type
SMARTSM003560.0176590IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-96790IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-66788IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
GTSHIFYKTR LCVQFRDGNC RNGDLCTFAH GTHDLRHPPS NWQELIRDRG PGNGNWGDDQ  60
TMIQRLKLCK KYFNGEECPY GEKCNFLHER PPPQTMKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078936.13e-46zinc finger CCCH domain-containing protein 39 isoform X1
RefseqXP_011078937.13e-46zinc finger CCCH domain-containing protein 39 isoform X2
SwissprotQ9LT811e-34C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLS8ECF52e-68S8ECF5_9LAMI; Uncharacterized protein (Fragment)
STRINGSolyc11g070070.1.11e-43(Solanum lycopersicum)
STRINGPGSC0003DMT4000655851e-43(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA65532434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.16e-37C3H family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]