PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS73634.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

HD-ZIP

Protein Properties

Length: 140aa MW: 16227.5 Da PI: 10.1018

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS73634.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59	7.6e-19	12	64	5	57
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 + ++++ql++Le+ F+ +++ e++ LAk lgL+ rq+ vWFqNrRa++k+ EPS73634.1 12 RGLSSDQLRTLERNFQLGKKLEPERKMYLAKILGLPPRQIAVWFQNRRARWKN 64 46799**********************************************95 PP
2	HD-ZIP_I/II	123.1	1.3e-39	9	99	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkr ls++q+++LE++F+ +kLeperK+ la+ Lgl prq+avWFqnrRAR+k+kqlEkdy+ Lk++y+ + +en++L++++++L++++ EPS73634.1 9 EKKRGLSSDQLRTLERNFQLGKKLEPERKMYLAKILGLPPRQIAVWFQNRRARWKNKQLEKDYDLLKAQYEGIIAENDALHTQNQKLQAKI 99 69**************************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.941	5	65	IPR001356	Homeobox domain
SMART	SM00389	6.5E-20	8	69	IPR001356	Homeobox domain
SuperFamily	SSF46689	8.98E-20	9	74	IPR009057	Homeodomain-like
CDD	cd00086	8.25E-15	10	66	No hit	No description
Pfam	PF00046	2.9E-16	12	64	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	8.2E-21	14	72	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	40	63	IPR017970	Homeobox, conserved site
Pfam	PF02183	3.6E-12	65	104	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 140 aa Download sequence Send to blast
EDEFSDDGEK KRGLSSDQLR TLERNFQLGK KLEPERKMYL AKILGLPPRQ IAVWFQNRRA 60 RWKNKQLEKD YDLLKAQYEG IIAENDALHT QNQKLQAKIL AMKRREKTES SINLNNKASC 120 SSNMRREEVV EGGLSLAPPV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	57	65	RRARWKNKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269\|PubMed:11292072}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017626534.1	2e-52	PREDICTED: homeobox-leucine zipper protein ATHB-13-like
Swissprot	Q8LC03	2e-49	ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBL	S8D1H6	7e-98	S8D1H6_9LAMI; Uncharacterized protein (Fragment)
STRING	Gorai.005G139600.1	1e-51	(Gossypium raimondii)
STRING	Gorai.013G083600.1	1e-51	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2041	23	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	1e-51	HD-ZIP family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ribone PA,Capella M,Chan RL Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development. J. Exp. Bot., 2015. 66(19): p. 5929-43 [PMID:26136262] Wang X, et al. Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana. Sci China Life Sci, 2018. 61(1): p. 79-87 [PMID:28887625] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]