PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS73715.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family G2-like
Protein Properties Length: 200aa    MW: 22138.3 Da    PI: 10.3332
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS73715.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.57.1e-342781155
     G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                kprl+Wtp+LH+rF+eav+qLGG+ekAtPk++l+lm+++gLtl+h+kSHLQkYRl
  EPS73715.1 27 KPRLKWTPDLHQRFIEAVNQLGGAEKATPKSVLKLMGIQGLTLYHLKSHLQKYRL 81
                79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.6572484IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-312582IPR009057Homeodomain-like
SuperFamilySSF466897.7E-172682IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-242782IPR006447Myb domain, plants
PfamPF002498.3E-112980IPR001005SANT/Myb domain
PfamPF143795.8E-24128174IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MSQASEKHLF MKNGSGDTGL VLSTDAKPRL KWTPDLHQRF IEAVNQLGGA EKATPKSVLK  60
LMGIQGLTLY HLKSHLQKYR LSKTLHGQQA SNKSGMNTAT GDRTTPSPTN IPHASNPNSA  120
LQTNKNLHLG EAIQMQIEVQ RRLHEQLEVQ RHLQLRIEAQ GKYLESVLEK AQETMGTQNL  180
GTISLEAAKL QLSDLMSKVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-242683158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-242683158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-242683158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-242683158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-242683158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-242683158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-242683158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-242683158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00331DAPTransfer from AT3G04030Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022899273.11e-103myb-related protein 2-like isoform X1
SwissprotQ9SQQ97e-89PHL9_ARATH; Myb-related protein 2
TrEMBLS8D2U31e-144S8D2U3_9LAMI; Uncharacterized protein (Fragment)
STRINGXP_002525443.16e-98(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29462451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.33e-91G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K
    NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis.
    Plant Sci., 2017. 263: p. 219-225
    [PMID:28818378]