PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS73746.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

WOX

Protein Properties

Length: 343aa MW: 37569.4 Da PI: 5.2275

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS73746.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	53.3	4.6e-17	45	105	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++ +eq+++Le F++ +p ++e++++ ++l ++ +++V++WFqNr+ + k+ EPS73746.1 45 KPRWNPRPEQIRILEGIFNSgMVNPPRDEIRRIRAQLqeygQVGDANVFYWFQNRKSRSKH 105 89***************99***********************************995 PP
2	Wus_type_Homeobox	111.9	3.4e-36	44	107	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +++RW+P+peQi+iLe +++sG+++P+++ei+ri+a+L+eyG+++d+NVfyWFQNrk+R+++kq EPS73746.1 44 PKPRWNPRPEQIRILEGIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKQ 107 689***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.139	41	106	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.84E-12	41	111	IPR009057	Homeodomain-like
SMART	SM00389	2.6E-8	43	110	IPR001356	Homeobox domain
CDD	cd00086	1.89E-7	44	107	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.8E-7	44	112	IPR009057	Homeodomain-like
Pfam	PF00046	9.6E-15	45	105	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008284	Biological Process	positive regulation of cell proliferation
GO:0009735	Biological Process	response to cytokinin
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0010075	Biological Process	regulation of meristem growth
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MSSSNRHWPS MFKSKPNHEH HHHLVAHRNS YSGKCGVEER TPEPKPRWNP RPEQIRILEG 60 IFNSGMVNPP RDEIRRIRAQ LQEYGQVGDA NVFYWFQNRK SRSKHKQRQM AKSTPPPQQQ 120 QATTAITITA TTAPSPSSPD NKETDPSTTN LVDLLNSTAN TYAPSSVQFP AEGFLFPMQQ 180 QEAVGGGGGG GGGGYGFCDG GGGFLLSELM LMSQSDSKRD ADDDAEDDDD DADDDDDGMK 240 KKKKRMSFCY AAGTSSEAAV TPGIFDLTGD DGVGPATRSS PPSTVVVFIN EVWFEIGSGP 300 FNVREAFGED AVLIQSTGHP VLTDEWGVTL QPLQHGGFYY LLR

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MSSSNRHWPS MFKSKPNHEH HHHLVAHRNS YSGKCGVEER TPEPKPRWNP RPEQIRILEG  60
IFNSGMVNPP RDEIRRIRAQ LQEYGQVGDA NVFYWFQNRK SRSKHKQRQM AKSTPPPQQQ  120
QATTAITITA TTAPSPSSPD NKETDPSTTN LVDLLNSTAN TYAPSSVQFP AEGFLFPMQQ  180
QEAVGGGGGG GGGGYGFCDG GGGFLLSELM LMSQSDSKRD ADDDAEDDDD DADDDDDGMK  240
KKKKRMSFCY AAGTSSEAAV TPGIFDLTGD DGVGPATRSS PPSTVVVFIN EVWFEIGSGP  300
FNVREAFGED AVLIQSTGHP VLTDEWGVTL QPLQHGGFYY LLR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011096377.1	1e-102	WUSCHEL-related homeobox 9
Refseq	XP_011096378.1	1e-102	WUSCHEL-related homeobox 9
Refseq	XP_011096381.1	1e-102	WUSCHEL-related homeobox 9
TrEMBL	S8D8G8	0.0	S8D8G8_9LAMI; Uncharacterized protein (Fragment)
STRING	EOY28117	5e-97	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5942	23	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33880.1	2e-53	homeobox-3

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]