PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS73793.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

SBP

Protein Properties

Length: 208aa MW: 22936.9 Da PI: 9.3606

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS73793.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.8	2e-40	25	100	2	77
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 C v+gCeadls +eyhrrhkvCe hskap+v+++g+eqrfCqqCsrfh+l efD +krsCr+rL++hn+rrrk++ EPS73793.1 25 CVVDGCEADLSLFREYHRRHKVCEPHSKAPTVTIHGKEQRFCQQCSRFHSLAEFDSGKRSCRKRLDGHNRRRRKPH 100 **************************************************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.8E-32	22	86	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.453	22	99	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	7.19E-38	24	103	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	3.3E-32	25	98	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048653	Biological Process	anther development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MESPESKKGQ NPLLPPPRKQ IAAQCVVDGC EADLSLFREY HRRHKVCEPH SKAPTVTIHG 60 KEQRFCQQCS RFHSLAEFDS GKRSCRKRLD GHNRRRRKPH ASGLYMSGRH HGCFPTTTYL 120 SFANPRPTVP PSSADSSAYC YSTSVAPPAV ACDRAFSFLS SPNASLHDVE SNDGAGAGFF 180 GSFQSYDGPP GPARALLLLL QLNHRITI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-28	25	98	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	81	98	KRSCRKRLDGHNRRRRKP

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00555	DAP	Transfer from AT5G50570	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305\|PubMed:16861571}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021723074.1	4e-43	squamosa promoter-binding-like protein 13A
Refseq	XP_021723075.1	4e-43	squamosa promoter-binding-like protein 13A
Refseq	XP_021723076.1	4e-43	squamosa promoter-binding-like protein 13A
Swissprot	Q0J0K1	7e-40	SPL18_ORYSJ; Squamosa promoter-binding-like protein 18
TrEMBL	S8ECW3	1e-151	S8ECW3_9LAMI; Uncharacterized protein
STRING	XP_006484146.1	7e-42	(Citrus sinensis)
STRING	XP_006437993.1	7e-42	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4920	20	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	3e-41	SBP family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]