PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS73837.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family CO-like
Protein Properties Length: 412aa    MW: 46381.8 Da    PI: 8.1039
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS73837.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box346e-1158101340
    zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 
                 +r C+++++k+++++C  ++ +lC++C ++ H++      H++v
  EPS73837.1  58 ARACDNCGKKRARWYCAADDAFLCQSCDSSVHSDralsrrHERV 101
                 678*****************************668888888876 PP
2CCT67.53.7e-23354396143
         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+
  EPS73837.1 354 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKR 396
                 9****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.7E-1056103IPR000315B-box-type zinc finger
PROSITE profilePS5011911.51956103IPR000315B-box-type zinc finger
PfamPF006433.3E-958101IPR000315B-box-type zinc finger
CDDcd000214.83E-1159103No hitNo description
PROSITE profilePS5101716.083354396IPR010402CCT domain
PfamPF062036.1E-18354396IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MLRLRRPPSS SKKGQVRVRN SSSSFSSVRR EEEIRSLDRE SSMAPDRKLA NVVGGKSARA  60
CDNCGKKRAR WYCAADDAFL CQSCDSSVHS DRALSRRHER VRLKTSTGED VSPPTWHRGF  120
TKKARTPRQK KNGKFHLEEP TGGKTENHNP LYLVPEICGE EQSQSHEENE EQLLYRVPVF  180
DPFGTEAELG SNSSSSAGAA IESRTHNFVS NFNGFLQPDM DLAEFAADVE CLLGKGLDDS  240
CFDMEELGIF DRPLKSEVET ALVMNENHQI DEKSIDDLPV PVVPCGGEEY EEDDTKTTFL  300
KLDLDGILSA WNSRNTPWIT GQKPDSKSID FWPDFFGTTA ARGDVWAAGG DGGREARVSR  360
YREKRRTRLF SKKIRYEVRK LNAEKRPRMK GRFVKRCSSS SSSAFPSSLI HQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1364380RRTRLFSKKIRYEVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076793.21e-127zinc finger protein CONSTANS-LIKE 16
SwissprotQ8RWD01e-93COL16_ARATH; Zinc finger protein CONSTANS-LIKE 16
TrEMBLS8EME70.0S8EME7_9LAMI; Uncharacterized protein
STRINGXP_010265147.11e-111(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15392470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.12e-85B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]