PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS73908.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

Protein Properties

Length: 122aa MW: 14302.5 Da PI: 8.7266

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS73908.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	42.8	9.4e-14	7	90	1	90
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+ v t+ + + ++l++pk+ ++ ++++ + + ++ + W++++ +++++ ++ GWk+F +n+L++gD +vF+l++ +e+ EPS73908.1 7 FEVVITKQNIQRPSLLYVPKQLYDQLP---RRQIPM-IIRSTDKIWDMQY--VGNGDHPRFGHGWKNFLCDNDLRAGDGCVFELMKFNEK 90 3344444444555999***997663...333334.445688***..999999***********************9864444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	9.61E-18	3	91	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	7.8E-16	4	90	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	6.59E-14	5	90	No hit	No description
PROSITE profile	PS50863	12.055	7	102	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.1E-10	7	92	IPR003340	B3 DNA binding domain
SMART	SM01019	2.9E-7	7	102	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 122 aa Download sequence Send to blast
LTGKPFFEVV ITKQNIQRPS LLYVPKQLYD QLPRRQIPMI IRSTDKIWDM QYVGNGDHPR 60 FGHGWKNFLC DNDLRAGDGC VFELMKFNEK KIEFRMILLR NEEPDELRAV ATSRGSLVDH 120 PI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	S8ED77	2e-86	S8ED77_9LAMI; Uncharacterized protein (Fragment)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1819	21	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06220.1	2e-09	B3 family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]