PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS73916.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

C3H

Protein Properties

Length: 92aa MW: 10449.9 Da PI: 9.0412

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS73916.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32.5	1.4e-10	9	31	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C++f+rtGtC yG +C+++H++ EPS73916.1 9 DCSYFLRTGTCAYGRNCRYNHPR 31 6********************96 PP
2	zf-CCCH	31.4	3.3e-10	54	76	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C +++rtG+CkyG+ Ck++H++ EPS73916.1 54 DCAYYLRTGFCKYGGGCKYNHPK 76 6********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	1.6E-4	4	31	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.563	4	32	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.15E-7	9	32	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.2E-8	9	31	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.9E-5	10	31	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.5E-4	49	76	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.544	49	77	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.02E-6	54	77	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.7E-8	54	76	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.4E-4	55	75	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 92 aa Download sequence Send to blast
FPERPGALDC SYFLRTGTCA YGRNCRYNHP RSRNHVSVLR EAADELPERP GAIDCAYYLR 60 TGFCKYGGGC KYNHPKNRHV DVPMNALGLP MR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011085488.1	2e-30	zinc finger CCCH domain-containing protein 3 isoform X1
Refseq	XP_011085489.1	2e-30	zinc finger CCCH domain-containing protein 33 isoform X2
Swissprot	Q84W91	4e-27	C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBL	S8D945	9e-62	S8D945_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.H01247.1.p	5e-29	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA21294	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.2	1e-29	C3H family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]