PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS73925.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family ARF
Protein Properties Length: 684aa    MW: 76358 Da    PI: 6.7956
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS73925.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.11.5e-22111213199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                 f+k+lt sd++++g +++p++ ae++       + +++  ++++ +d++ ++W++++iy   +++r++lt+GW+ Fv++++L +gD v+F   ++++++
  EPS73925.1 111 FCKTLTASDTSTHGGFSVPRRAAEKIfppldysM-QPPA-QEISARDLHDQKWTFRHIYrGSQPKRHLLTTGWSVFVSSKRLVAGDAVIFV--RDDKRQ 205
                 99*****************************954.5444.38*****************4455666*************************..457888 PP

                 .EEEEE-S CS
          B3  92 lvvkvfrk 99 
                 l+++++r 
  EPS73925.1 206 LRLGIRRG 213
                 89999985 PP
2Auxin_resp112.25.1e-37238320183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aaha +++s+F+++YnPras+seFv++++k++kal v+vs+GmRf+m+fe+e+s  rr +Gtv+g+sdld  rW++S+Wr+L+
  EPS73925.1 238 AAHASANNSPFTIFYNPRASRSEFVIPLSKYSKALCVQVSPGMRFRMMFESEESGIRRHMGTVTGISDLDHARWKGSHWRNLQ 320
                 799******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.89E-41102240IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.6E-40103226IPR015300DNA-binding pseudobarrel domain
CDDcd100178.40E-21110212No hitNo description
PfamPF023622.5E-20111213IPR003340B3 DNA binding domain
SMARTSM010192.7E-23111214IPR003340B3 DNA binding domain
PROSITE profilePS5086312.379111214IPR003340B3 DNA binding domain
PfamPF065071.7E-32238320IPR010525Auxin response factor
PfamPF023098.3E-10585676IPR033389AUX/IAA domain
PROSITE profilePS5174524.737588674IPR000270PB1 domain
SuperFamilySSF542773.14E-8599668No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    Send to blast
INSELWHACA GPLVSLPNAG TLVAYFPQGH SEQVAKSMQK EADGMIPSYP NLPSKLICIL  60
HNVTLHADAE TDEVYARMTL QPVGSKYEQE PPPPSPFLIS DIHSKQPGEF FCKTLTASDT  120
STHGGFSVPR RAAEKIFPPL DYSMQPPAQE ISARDLHDQK WTFRHIYRGS QPKRHLLTTG  180
WSVFVSSKRL VAGDAVIFVR DDKRQLRLGI RRGNKQIPAM SSSIVSSDSM LIGILAAAAH  240
ASANNSPFTI FYNPRASRSE FVIPLSKYSK ALCVQVSPGM RFRMMFESEE SGIRRHMGTV  300
TGISDLDHAR WKGSHWRNLQ VGWDESTVGG QRTSRASIWE IEPVVTPFYL CPPPFPRSML  360
GRNPPPCFGD GDLDFGFFRD ASSTSSMLIH RNLVQWIHDQ SKLLNARSFG GYAPPLHQGN  420
STPTWPQHQQ QIAAYQNDVS STNRGTPLHE DLQMQFESRL FPMHHPDQMN GVSFSSPQLA  480
SNHFLNNRTE PLQQISLTDS DVVVQPQIHN YNSTLLPSMD APAALAPDAL LSRGYDSGKD  540
IPSYSGTPRE IDTDMSSGIQ SQSFGVPNMS YEIAAVSNGG QRCNNRIRTY TKVQKRGSVG  600
RTIDVTHYNG YDELKRDLAR MFGIEGLLED PEKRTTEWKL VYVDHENDIL LVGDDPWEEF  660
ISCVQSIKIL SSVEVQQMSL EGEL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-156134251388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Involved in ethylene responses. Regulates lateral root formation through direct regulation of LBD16 and/or LBD29. Functionally redundant with ARF7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16461383, ECO:0000269|PubMed:17259263}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin and ethylene. {ECO:0000269|PubMed:16461383}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011093873.10.0auxin response factor 19 isoform X1
SwissprotQ8RYC80.0ARFS_ARATH; Auxin response factor 19
TrEMBLS8D3I00.0S8D3I0_9LAMI; Auxin response factor (Fragment)
STRINGPavir.Db01975.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13022465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.11e-180auxin response factor 19
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  3. Perilli S, et al.
    RETINOBLASTOMA-RELATED protein stimulates cell differentiation in the Arabidopsis root meristem by interacting with cytokinin signaling.
    Plant Cell, 2013. 25(11): p. 4469-78
    [PMID:24285791]
  4. Sun Y, et al.
    Manipulation of Auxin Response Factor 19 affects seed size in the woody perennial Jatropha curcas.
    Sci Rep, 2017. 7: p. 40844
    [PMID:28102350]
  5. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  6. Olmo R, et al.
    Molecular Transducers from Roots Are Triggered in Arabidopsis Leaves by Root-Knot Nematodes for Successful Feeding Site Formation: A Conserved Post-Embryogenic De novo Organogenesis Program?
    Front Plant Sci, 2017. 8: p. 875
    [PMID:28603536]
  7. Lee K,Seo PJ
    High-temperature promotion of callus formation requires the BIN2-ARF-LBD axis in Arabidopsis.
    Planta, 2017. 246(4): p. 797-802
    [PMID:28766014]
  8. Ayala-Rodríguez JÁ,Barrera-Ortiz S,Ruiz-Herrera LF,López-Bucio J
    Folic acid orchestrates root development linking cell elongation with auxin response and acts independently of the TARGET OF RAPAMYCIN signaling in Arabidopsis thaliana.
    Plant Sci., 2017. 264: p. 168-178
    [PMID:28969797]
  9. Nakamura M, et al.
    Auxin and ROP GTPase Signaling of Polar Nuclear Migration in Root Epidermal Hair Cells.
    Plant Physiol., 2018. 176(1): p. 378-391
    [PMID:29084900]
  10. Hong L, et al.
    Alternative polyadenylation is involved in auxin-based plant growth and development.
    Plant J., 2018. 93(2): p. 246-258
    [PMID:29155478]
  11. Lee K,Park OS,Seo PJ
    Arabidopsis ATXR2 deposits H3K36me3 at the promoters of LBD genes to facilitate cellular dedifferentiation.
    Sci Signal, 2018.
    [PMID:29184030]
  12. Kimura T, et al.
    Asymmetric Auxin Distribution is Not Required to Establish Root Phototropism in Arabidopsis.
    Plant Cell Physiol., 2018. 59(4): p. 823-835
    [PMID:29401292]
  13. Schoenaers S, et al.
    The Auxin-Regulated CrRLK1L Kinase ERULUS Controls Cell Wall Composition during Root Hair Tip Growth.
    Curr. Biol., 2018. 28(5): p. 722-732.e6
    [PMID:29478854]
  14. Huang KL, et al.
    The ARF7 and ARF19 Transcription Factors Positively Regulate PHOSPHATE STARVATION RESPONSE1 in Arabidopsis Roots.
    Plant Physiol., 2018. 178(1): p. 413-427
    [PMID:30026290]