PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS73929.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family ERF
Protein Properties Length: 103aa    MW: 11708.2 Da    PI: 10.5158
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS73929.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.8e-191464256
         AP2  2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56
                gykGVr +k +g+WvAe+r        +  r++lg++ taeeAa+a++aa  +l+g+
  EPS73929.1 14 GYKGVRMRK-WGKWVAEVRQlQ-----SrDRIWLGSYQTAEEAARAYDAAVFCLRGP 64
                8******99.*******66632.....34*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.2071471IPR001471AP2/ERF domain
PfamPF008471.1E-131463IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-221472IPR016177DNA-binding domain
SMARTSM003802.9E-351477IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.2E-301572IPR001471AP2/ERF domain
CDDcd000181.34E-271573No hitNo description
PRINTSPR003673.0E-101526IPR001471AP2/ERF domain
PRINTSPR003673.0E-103753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
MDRPQSRRDR RDGGYKGVRM RKWGKWVAEV RQLQSRDRIW LGSYQTAEEA ARAYDAAVFC  60
LRGPSAVINF PDDPPEEIGS ANELSPAQIR VLAANHARKL TKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1713731374Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015867486.19e-45ethylene-responsive transcription factor ERF018-like
RefseqXP_022843339.13e-44ethylene-responsive transcription factor RAP2-9-like
SwissprotQ9C5916e-31ERF16_ARATH; Ethylene-responsive transcription factor ERF016
TrEMBLS8D2I39e-70S8D2I3_9LAMI; Uncharacterized protein (Fragment)
STRINGcassava4.1_018072m3e-42(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.12e-25ERF family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]