PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS73950.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

G2-like

Protein Properties

Length: 161aa MW: 18400.8 Da PI: 7.2963

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS73950.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	92.7	3e-29	1	53	3	55
G2-like 3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 rl+W+peLH++F++aveqLGG+e+AtPk+++++m+v+gLtl+h+kSHLQ Rl EPS73950.1 1 RLKWSPELHQKFIDAVEQLGGAERATPKSLMKIMGVQGLTLHHLKSHLQAIRL 53 89***********************************************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01557	1.1E-20	1	54	IPR006447	Myb domain, plants
Pfam	PF00249	4.6E-8	1	49	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.08E-12	1	53	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.912	1	56	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.5E-25	1	54	IPR009057	Homeodomain-like
Pfam	PF14379	9.4E-19	91	136	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence Send to blast
RLKWSPELHQ KFIDAVEQLG GAERATPKSL MKIMGVQGLT LHHLKSHLQA IRLGKSQACN 60 HNKQEEDGKY SEKDENGSHE EDRDETYKSL QIKQALEMQM KVESQLHEQL EAQRQLQLRI 120 EAQGKYLQSL LKKSVETLSQ QSSTSIEVDH AKAQLSLLLS F

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-20	1	55	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-20	1	55	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-20	1	55	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-20	1	55	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011075513.1	5e-61	myb family transcription factor PHL8-like
Swissprot	F4I274	5e-49	PHL8_ARATH; Myb family transcription factor PHL8
TrEMBL	S8D3K3	1e-111	S8D3K3_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.L01279.1.p	5e-59	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6036	19	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69580.1	4e-41	G2-like family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]