PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS73952.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

ZF-HD

Protein Properties

Length: 199aa MW: 22271.6 Da PI: 8.6933

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS73952.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	93.8	1.4e-29	34	86	3	57
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 +v+Y+eC+kNhAa++GghavDGCgEfm+ + +a+kCaACgCHRnFHR+ + EPS73952.1 34 AVEYRECMKNHAAHIGGHAVDGCGEFMKP--VYAAGDAMKCAACGCHRNFHRQVM 86 689**********************98..445689*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	1.2E-24	35	85	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	3.8E-24	36	84	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	1.0E-15	37	84	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	24.413	37	85	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	2.1E-29	124	197	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.08E-18	125	194	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	6.2E-28	136	192	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
DSEIDTPPHA AQPVIIRPLS FSKILPPAPP SVPAVEYREC MKNHAAHIGG HAVDGCGEFM 60 KPVYAAGDAM KCAACGCHRN FHRQVMSPLI LYFADIDFQV TQPGILFPFR NGLTPSPPEE 120 RQQAPVTPMG NSLSGRKRFR TKFSQEQKDK MHSFSEKIGW KMQKCDDSEV RDFCSEIGVS 180 RGVFKVWMHN NKTLIAKKD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	2e-20	137	192	18	73	ZF-HD homeobox family protein
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022878317.1	2e-62	zinc-finger homeodomain protein 10-like
TrEMBL	S8EMN5	1e-148	S8EMN5_9LAMI; Uncharacterized protein (Fragment)
STRING	XP_009788342.1	5e-57	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1088	24	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28920.1	8e-47	homeobox protein 34

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]