PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS73979.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

TCP

Protein Properties

Length: 154aa MW: 17984.3 Da PI: 9.7543

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS73979.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	109.1	6.7e-34	13	115	3	89
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg............ 88 g kdrhsk++T +g RdRRvRls+e+a++++dLqd+LG+ ++sk ++WLl+ ak ai+el+ + ++++ + + + ++++++++++ EPS73979.1 13 GTKDRHSKVYTVKGVRDRRVRLSVETAIQLYDLQDRLGLNQPSKVVDWLLNVAKNAIDELPPLHFPPQPTFfS-MHGVQQQQQQQQPfltdyynpnpff 110 78*************************************************************9999955542.3333333333333455667666555 PP TCP 89 ....k 89 + EPS73979.1 111 rfqeD 115 55441 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	5.8E-30	13	87	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	31.074	14	72	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 154 aa Download sequence Send to blast
KDPRISRVSR ALGTKDRHSK VYTVKGVRDR RVRLSVETAI QLYDLQDRLG LNQPSKVVDW 60 LLNVAKNAID ELPPLHFPPQ PTFFSMHGVQ QQQQQQQPFL TDYYNPNPFF RFQEDPSSNL 120 TLSSRTFDHH HQELHNFGVV QWPSILPSHQ VVVY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	2e-21	19	73	1	55	Putative transcription factor PCF6
5zkt_B	2e-21	19	73	1	55	Putative transcription factor PCF6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:25378179}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015064545.1	6e-45	transcription factor TCP17 isoform X1
Swissprot	Q9LEZ9	2e-36	TCP17_ARATH; Transcription factor TCP17
TrEMBL	S8D2N3	1e-109	S8D2N3_9LAMI; Uncharacterized protein (Fragment)
STRING	Solyc02g089020.1.1	4e-44	(Solanum lycopersicum)
STRING	XP_009623901.1	6e-44	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA821	24	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08070.1	1e-38	TCP domain protein 17

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549]