PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS74103.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

bZIP

Protein Properties

Length: 75aa MW: 8769.93 Da PI: 10.557

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS74103.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	71.4	1.4e-22	9	71	1	63
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkrerrkq+NRe+ArrsR+RK+ae+eeL++kv++L + N+ Lk+e+++l +++akl+ e+ EPS74103.1 9 ERELKRERRKQSNRESARRSRLRKQAETEELANKVQALASDNMNLKSEINKLMENSAKLELEN 71 89*********************************************************9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.1E-15	5	68	No hit	No description
Pfam	PF00170	1.1E-20	9	71	IPR004827	Basic-leucine zipper domain
SMART	SM00338	3.5E-18	9	73	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	12.576	11	74	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.19E-12	12	67	No hit	No description
CDD	cd14702	2.65E-9	14	62	No hit	No description
PROSITE pattern	PS00036	0	16	31	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 75 aa Download sequence Send to blast
INVTETQKER ELKRERRKQS NRESARRSRL RKQAETEELA NKVQALASDN MNLKSEINKL 60 MENSAKLELE NAALM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	25	31	RRSRLRK
2	25	32	RRSRLRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-activator of a beta-glucuronidase (GUS) reporter gene. Binds to a G-box-related element, (5'-GCAACGTGGC-3'). Also binds to the HEX-motif of wheat histone H3 promoter.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011093351.1	3e-30	common plant regulatory factor 1 isoform X1
Refseq	XP_011093357.1	3e-30	common plant regulatory factor 1 isoform X3
Refseq	XP_011093363.1	2e-30	common plant regulatory factor 1 isoform X5
Refseq	XP_020551515.1	3e-30	common plant regulatory factor 1 isoform X2
Refseq	XP_020551517.1	2e-30	common plant regulatory factor 1 isoform X4
Swissprot	Q99142	1e-29	TAF1_TOBAC; Transcriptional activator TAF-1 (Fragment)
TrEMBL	S8EDR1	9e-42	S8EDR1_9LAMI; Uncharacterized protein (Fragment)
STRING	XP_009593289.1	1e-27	(Nicotiana tomentosiformis)
STRING	Migut.B01828.1.p	6e-28	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3113	24	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46270.2	3e-19	G-box binding factor 3

Publications ? help Back to Top
Oeda K,Salinas J,Chua NH A tobacco bZip transcription activator (TAF-1) binds to a G-box-like motif conserved in plant genes. EMBO J., 1991. 10(7): p. 1793-802 [PMID:2050116] Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]