PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS74199.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

bHLH

Protein Properties

Length: 163aa MW: 18654.7 Da PI: 7.112

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS74199.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.1	8.5e-05	2	40	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 RR ri +a++ Lrel+P++ k + + + +++++k+Lq EPS74199.1 2 RRLRIAHAIDALRELVPHN-----KEVGREAFVDIVIDHVKHLQ 40 99****************8.....44666677777777777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.102	1	39	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.42E-4	2	42	No hit	No description
SuperFamily	SSF47459	7.33E-7	2	50	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-4	2	49	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
SRRLRIAHAI DALRELVPHN KEVGREAFVD IVIDHVKHLQ NQMKELCQSR LSGESSSAPV 60 TFIEGHGHYI VQEQMLIGPL EETLGEMFTV YPSAADSLLQ SKGLVVMPMC FADGLCENNE 120 ILIKKKKITY NKLYVVVFRK EWSFFIWGIC NNSIRLSVLE FFN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011079827.1	6e-48	transcription factor bHLH66-like isoform X5
Refseq	XP_020550207.1	2e-47	transcription factor bHLH66-like isoform X4
TrEMBL	S8D396	1e-118	S8D396_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.D00274.1.p	2e-41	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9646	16	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	2e-11	LJRHL1-like 1

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]