PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS74381.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family C2H2
Protein Properties Length: 324aa    MW: 36161.9 Da    PI: 8.7709
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS74381.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.72.6e-07178200123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 + C+ Cgk F+r  nL+ H+r H
  EPS74381.1 178 HYCQVCGKGFKRDANLRMHMRAH 200
                 68*******************99 PP
2zf-C2H211.20.0011269292123
                 EEETTTT.EEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                 y+C+ C+ k+Fs  s+L++H + +
  EPS74381.1 269 YVCKRCNaKHFSVLSDLRTHEKHC 292
                 9*******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.75E-6176203No hitNo description
SMARTSM003550.0034178200IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-6178204IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.653178205IPR007087Zinc finger, C2H2
PfamPF128740.0019179198No hitNo description
PROSITE patternPS000280180200IPR007087Zinc finger, C2H2
SMARTSM0035576231264IPR015880Zinc finger, C2H2-like
SMARTSM0035530269291IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
INQQVLSENN SSNFLFNLSV LKNKVHQIQS LASILLSPEN PHAAESATAV AIPAMSNLIQ  60
EIVVTASSMM FSVQQMGLGP PPPPHRSPPP PPERPPAAES GQEYFSEQPH HNESVDHRWY  120
GDDQYHSCND DADNNNNSNS NKRFPGDKKS PAKQEADPPA KYDIVELDAA DLLAKYTHYC  180
QVCGKGFKRD ANLRMHMRAH GDEYKSSAAL SNPTKKLGPS VGGGERLPRK YSCPHDGCRW  240
NKNHAKFQPL KSMICVKNHY KRSHCPKMYV CKRCNAKHFS VLSDLRTHEK HCGDLKWQCS  300
CGTTFSRKDK LMGHVGLFVG HVPV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089967.11e-139zinc finger protein STOP1 homolog
SwissprotQ0WT241e-107STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLS8DA710.0S8DA71_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.N02542.1.p1e-137(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112652225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-101C2H2 family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]