PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS74389.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

LBD

Protein Properties

Length: 101aa MW: 11550.3 Da PI: 9.0671

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS74389.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	130.1	9.6e-41	1	100	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaC++lrr+C++dC++apyfpa++p++f +vh+++Gasnv k+l++lpe+ r +a++sl yeA +r++dPvyG vg+i+ l+qq++ ++ +la++++ EPS74389.1 1 RCAACRHLRRRCPSDCIFAPYFPANNPRRFSYVHRIYGASNVAKILQDLPENVRGEAADSLHYEAYCRIKDPVYGIVGMITVLHQQICAAQRHLARVHA 99 6**********************************************************************************************9998 PP DUF260 100 e 100 e EPS74389.1 100 E 100 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.132	1	101	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.8E-39	1	98	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016020	Cellular Component	membrane

Sequence ? help Back to Top
Protein Sequence Length: 101 aa Download sequence Send to blast
RCAACRHLRR RCPSDCIFAP YFPANNPRRF SYVHRIYGAS NVAKILQDLP ENVRGEAADS 60 LHYEAYCRIK DPVYGIVGMI TVLHQQICAA QRHLARVHAE I

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-34	2	101	12	111	LOB family transfactor Ramosa2.1
5ly0_B	3e-34	2	101	12	111	LOB family transfactor Ramosa2.1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00381	DAP	Transfer from AT3G26620	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011098999.1	2e-55	LOB domain-containing protein 23-like
Swissprot	P59468	3e-43	LBD24_ARATH; LOB domain-containing protein 24
TrEMBL	S8D3V3	4e-68	S8D3V3_9LAMI; Uncharacterized protein (Fragment)
STRING	evm.model.supercontig_1.339	8e-50	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5277	20	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	6e-37	LOB domain-containing protein 24

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]