PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS74454.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

C3H

Protein Properties

Length: 205aa MW: 23102.4 Da PI: 9.192

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS74454.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.5	8.2e-12	23	48	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+++ rtG C++G++C+F+H+p EPS74454.1 23 GEPDCSYYIRTGLCRFGATCRFNHPP 48 6899********************97 PP
2	zf-CCCH	38.7	1.7e-12	69	93	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++ +tGtCk+G++CkF+H+p EPS74454.1 69 QPECQYYIKTGTCKFGATCKFHHPP 93 799********************97 PP
3	zf-CCCH	36.9	6e-12	117	139	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C +++r G+Ck+G++CkF+H++ EPS74454.1 117 ECAYYMRHGFCKFGSTCKFNHPQ 139 7********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	14.239	21	49	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.8E-5	21	48	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.5E-8	23	48	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.11E-5	26	49	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.2E-4	27	47	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.3E-5	66	93	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.962	66	94	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.3E-9	69	93	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	9.94E-7	70	95	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.4E-5	72	92	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.324	112	140	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.1E-4	112	139	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.27E-6	115	139	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.4E-9	117	139	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.0E-4	118	138	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
VLWDMNSRLR EPSDSGHYPV REGEPDCSYY IRTGLCRFGA TCRFNHPPNR KLAIATAQMK 60 GEYPERIGQP ECQYYIKTGT CKFGATCKFH HPPDKAGIAG RVPLNVHGYP LRPNEIECAY 120 YMRHGFCKFG STCKFNHPQL SNIMVSLRGS TVYPTIHSPT AGQLPYPLSR PSYIPSPRWQ 180 NPSTTYGPLV MPQGVLSIPT WNSYG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020551199.1	1e-120	zinc finger CCCH domain-containing protein ZFN-like
Swissprot	Q9SWF9	1e-104	ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBL	S8D3Z8	1e-151	S8D3Z8_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.F01877.1.p	1e-111	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5289	24	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	2e-93	zinc finger protein 1

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]