PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS74461.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family C2H2
Protein Properties Length: 204aa    MW: 22654.2 Da    PI: 8.3056
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS74461.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000142440319
                ETTTTEEESSHHHHHHH CS
     zf-C2H2  3 CpdCgksFsrksnLkrH 19
                C++Cgk Fs++ ++  H
  EPS74461.1 24 CENCGKEFSSWKSFLDH 40
                **************999 PP
2zf-C2H211.50.00091113135123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C+ C+k+F+++  L  H  +H
  EPS74461.1 113 FECKACKKVFNSHQALGGHRASH 135
                 89**************9999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.9E-8112135No hitNo description
PfamPF139122.3E-10113137IPR007087Zinc finger, C2H2
SMARTSM003550.13113135IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.076113140IPR007087Zinc finger, C2H2
PROSITE patternPS000280115135IPR007087Zinc finger, C2H2
SuperFamilySSF576676.9E-8176203No hitNo description
PfamPF139121.5E-11181204IPR007087Zinc finger, C2H2
SMARTSM003550.23181203IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.286181204IPR007087Zinc finger, C2H2
PROSITE patternPS000280183203IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
PGNNSRSMYQ LRTNPNRLKS CRNCENCGKE FSSWKSFLDH GKCISDEGSE SLVSTDDDDD  60
DRRRKGKRSL NDSNCDTDGE EDDEILLARC LVRLANTVME ASPAESPKAK GIFECKACKK  120
VFNSHQALGG HRASHKKVKG CFASKTDENA GEDEVITNNG EYTPARAYVS TAPRNGKTKK  180
HECSICHRVF PSGRALGGHK RCHW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090189.11e-70uncharacterized protein LOC105170939
TrEMBLS8DAE01e-149S8DAE0_9LAMI; Uncharacterized protein (Fragment)
STRINGXP_004308477.11e-66(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19102243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.12e-34C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]