PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS74590.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

bHLH

Protein Properties

Length: 107aa MW: 12251.9 Da PI: 5.2614

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS74590.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.2	9.2e-11	30	78	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ah+ +Er RR++i +++ L++l+P + ++ Ka +L + ++Y++sLq EPS74590.1 30 AHSLAERVRREKISERMKILQSLVPGC---SKVVTGKAVMLDEIINYVQSLQ 78 8************************...8888***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.1E-18	23	96	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.85E-9	24	82	No hit	No description
PROSITE profile	PS50888	15.447	26	77	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.5E-8	30	78	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-17	30	95	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.3E-11	32	83	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 107 aa Download sequence Send to blast
QEDNEEEDEE EAPPKDYIHV RARRGQATDA HSLAERVRRE KISERMKILQ SLVPGCSKVV 60 TGKAVMLDEI INYVQSLQRQ VEFLSMKLAT INQRVVMNTE TPVSKDV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012481609.1	1e-50	PREDICTED: transcription factor bHLH62
Refseq	XP_016714064.1	1e-50	PREDICTED: transcription factor bHLH62-like
Refseq	XP_016722857.1	1e-50	PREDICTED: transcription factor bHLH62-like
Swissprot	Q9SRT2	3e-47	BH062_ARATH; Transcription factor bHLH62
TrEMBL	S8D585	3e-72	S8D585_9LAMI; Uncharacterized protein (Fragment)
STRING	Gorai.005G022400.1	1e-49	(Gossypium raimondii)
STRING	Solyc09g097870.2.1	7e-50	(Solanum lycopersicum)
STRING	PGSC0003DMT400042791	9e-50	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4116	23	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	6e-49	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]