PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC000063.50
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 188aa    MW: 19345.6 Da    PI: 10.7933
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC000063.50genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.61.2e-0726551847
                     HTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 18 qlGggtWktIartmgkgRtlkqcksrwqky 47
                     ++G+g+W++I+r +  +Rt+ q+ s+ qky
     EcC000063.50 26 KYGKGDWRSISRNFVVTRTPTQVASHAQKY 55
                     8****************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR015573.3E-92458IPR006447Myb domain, plants
SuperFamilySSF466893.78E-82461IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.5E-52554IPR009057Homeodomain-like
CDDcd001672.89E-42656No hitNo description
PfamPF002491.8E-52655IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007165Biological Processsignal transduction
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0043531Molecular FunctionADP binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MICEVNTATA DGRGSDGNPQ KARLDKYGKG DWRSISRNFV VTRTPTQVAS HAQKYFIRLS  60
SVNKDRRRSS IHDITTVGSG DLSAPQGPIT GQNQTDGSAG GVSSGKSNKQ SPQSPAVTSG  120
VAVSGPPPSI GQPVGGPFVS AVGTPVNLST APHMAYGVRG QVQGTVVPGA PINMGSVTYP  180
MPHASAHR
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010031381.11e-114PREDICTED: transcription factor DIVARICATA
SwissprotQ9FNN65e-55SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A059ABA11e-113A0A059ABA1_EUCGR; Uncharacterized protein
STRINGXP_010031380.11e-113(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.12e-57MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]