PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC000071.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 253aa    MW: 28932.3 Da    PI: 9.796
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC000071.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.26.5e-16195242253
           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53 
                    ykGVr+++ +g+++AeIrdp+    r  r++lg++ taeeAa a+ + ++++
  EcC000071.10 195 AYKGVRRRP-WGKFAAEIRDPT----RkVRVWLGTYSTAEEAALAYQKKKLEI 242
                   69*******.**********84....35******************9988876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.60E-21194235No hitNo description
SuperFamilySSF541713.14E-16194242IPR016177DNA-binding domain
SMARTSM003804.0E-17195253IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-22195243IPR001471AP2/ERF domain
PROSITE profilePS5103218.452195252IPR001471AP2/ERF domain
PfamPF008471.9E-10195242IPR001471AP2/ERF domain
PRINTSPR003675.5E-10196207IPR001471AP2/ERF domain
PRINTSPR003675.5E-10218234IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MPLVDPPSFL ICFGFLFWHR EIERYHIRRP GLIRSQELAS SSASVLALFV PRYRGIRASL  60
CDLDQKVPPL AREEKRMPGV DSRFLNPNMS TERVLEKKTP GREDRRLIPM RKLRVTYCDP  120
DMTDSSSDED DTRCGLRIAP RKKSVQVVKE IVIPCARHES CEGISPCLAN NCQKCSASGN  180
DVLSEASMRA RGSSAYKGVR RRPWGKFAAE IRDPTRKVRV WLGTYSTAEE AALAYQKKKL  240
EIDQQMESRR KEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-14196237648ATERF1
3gcc_A6e-14196237648ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010036883.11e-124PREDICTED: ethylene-responsive transcription factor CRF3-like
STRINGXP_010036883.11e-124(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49120.11e-19ERF family protein