PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC000134.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NF-YA

Protein Properties

Length: 271aa MW: 30256.7 Da PI: 10.3454

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC000134.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	102.4	4.3e-32	112	168	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQ+q+Il+RRq+Rak+e ekkl +k rkpylheSRh+hA+rR+Rg+gGrF EcC000134.10 112 QEPVYVNAKQFQGILRRRQARAKAELEKKL-IKVRKPYLHESRHQHAMRRARGTGGRF 168 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	6.5E-35	110	171	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.408	111	171	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	2.4E-28	113	168	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.1E-23	114	136	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	116	136	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	1.1E-23	145	168	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010262	Biological Process	somatic embryogenesis
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0055046	Biological Process	microgametogenesis
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
GNQGQGPQNG HGAPTIIPMR DDGLAQPPQL ELVGHTIACA SNPYQDPYYG GVMAQYGHQS 60 MVRTPQISFN TTPTYYALAF IPVHAQLSQI VFRKRIRKVR FFWMPLPLDL AQEPVYVNAK 120 QFQGILRRRQ ARAKAELEKK LIKVRKPYLH ESRHQHAMRR ARGTGGRFAK KSETDASNDA 180 AEEKGTNSGP ALSSQSASSS GSEPLAPDSS ETWNSSSNHV AGRSQVHGTH RGHDYVNGNS 240 QYQNHGHFQA SAYSNERERD RFGQQPRERL L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	3e-19	112	176	2	66	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010031785.1	1e-140	PREDICTED: nuclear transcription factor Y subunit A-1
Refseq	XP_010031786.1	1e-140	PREDICTED: nuclear transcription factor Y subunit A-1
Refseq	XP_010031787.1	1e-140	PREDICTED: nuclear transcription factor Y subunit A-1
Swissprot	Q9LXV5	3e-57	NFYA1_ARATH; Nuclear transcription factor Y subunit A-1
TrEMBL	A0A059AAP6	1e-152	A0A059AAP6_EUCGR; Uncharacterized protein
STRING	XP_010031785.1	1e-140	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5946	26	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12840.3	5e-55	nuclear factor Y, subunit A1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Siriwardana CL, et al. NUCLEAR FACTOR Y, Subunit A (NF-YA) Proteins Positively Regulate Flowering and Act Through FLOWERING LOCUS T. PLoS Genet., 2016. 12(12): p. e1006496 [PMID:27977687] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]