PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC000178.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

HD-ZIP

Protein Properties

Length: 229aa MW: 25988.2 Da PI: 8.8721

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC000178.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.5	1.3e-19	52	105	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++t+eqle Le+ F+++ +++ +++ +L+++lgL+ rq+++WFqNrRa++k EcC000178.10 52 KKKKLTSEQLEMLERSFQEEIKLDPDRKMRLSRELGLQPRQITIWFQNRRARWK 105 56789************************************************9 PP
2	HD-ZIP_I/II	116.8	1.2e-37	52	142	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kk++l++eq+++LE+sF+ee kL+p+rK++l+reLglqprq+ +WFqnrRAR+ktkqlE+ y+aLk ++da+++e+ rL++ev++L++ ++ EcC000178.10 52 KKKKLTSEQLEMLERSFQEEIKLDPDRKMRLSRELGLQPRQITIWFQNRRARWKTKQLERLYDALKLEFDAVSREKLRLQEEVSRLKAMVS 142 9*************************************************************************************98775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.4E-20	27	109	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.362	47	107	IPR001356	Homeobox domain
SMART	SM00389	1.1E-17	50	111	IPR001356	Homeobox domain
Pfam	PF00046	5.1E-17	52	105	IPR001356	Homeobox domain
CDD	cd00086	7.17E-17	52	108	No hit	No description
Gene3D	G3DSA:1.10.10.60	7.2E-21	54	114	IPR009057	Homeodomain-like
PRINTS	PR00031	6.2E-5	78	87	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	82	105	IPR017970	Homeobox, conserved site
PRINTS	PR00031	6.2E-5	87	103	IPR000047	Helix-turn-helix motif
Pfam	PF02183	5.7E-8	107	141	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009965	Biological Process	leaf morphogenesis
GO:0010434	Biological Process	bract formation
GO:0010582	Biological Process	floral meristem determinacy
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MQKYDGTSTS YAFPSLVGME LKHHHHHHHP PPLSSSMAEA HNDVVVAASM DKKKKLTSEQ 60 LEMLERSFQE EIKLDPDRKM RLSRELGLQP RQITIWFQNR RARWKTKQLE RLYDALKLEF 120 DAVSREKLRL QEEVSRLKAM VSDIQAAKKK QVSTGYTDIS GDETVESARY SGDIRHCSDL 180 TRGAGGGGGV TPTPSTTQHH PLAGSSYQLF TLQDYESNSY WGVLPSSYP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	99	107	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00486	DAP	Transfer from AT5G03790	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018730316.1	1e-137	PREDICTED: homeobox-leucine zipper protein ATHB-13 isoform X1
Swissprot	Q9LZR0	7e-46	ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBL	A0A059DFC4	1e-135	A0A059DFC4_EUCGR; Uncharacterized protein
STRING	XP_010050142.1	1e-136	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1660	28	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	3e-48	homeobox 51

Publications ? help Back to Top
Andres RJ, et al. Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.). Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66 [PMID:27999177] Vuolo F, et al. LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication. Genes Dev., 2018. 32(21-22): p. 1361-1366 [PMID:30366902]