PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC000267.20

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NAC

Protein Properties

Length: 165aa MW: 19358 Da PI: 8.7538

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC000267.20	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	177	5.2e-55	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeelv++yLk+k++g+++el ++i+e+d+yk+ePw+L k + +++ ewyfF +rd+ky++g r+nrat++gyWk+tgkd++v+s EcC000267.20 6 LPPGFRFHPTDEELVNYYLKRKINGQEIEL-DIIPEIDLYKCEPWELAeKsFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRKVTS- 100 79**************************.99**********84335556888**********************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +g+kktLv+y+grap+g++tdW mheyrl EcC000267.20 101 QNRPIGMKKTLVYYRGRAPQGVRTDWGMHEYRL 133 999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.62E-60	3	140	IPR003441	NAC domain
PROSITE profile	PS51005	54.597	6	154	IPR003441	NAC domain
Pfam	PF02365	3.0E-30	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
MAPLGLPPGF RFHPTDEELV NYYLKRKING QEIELDIIPE IDLYKCEPWE LAEKSFLPSR 60 DPEWYFFGPR DRKYPNGFRT NRATRAGYWK STGKDRKVTS QNRPIGMKKT LVYYRGRAPQ 120 GVRTDWGMHE YRLDDKDSED TSGMQVQFAD VVLKCSMTFF PSLCN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	6e-54	2	133	11	140	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010069496.1	1e-104	PREDICTED: NAC domain-containing protein 86
Swissprot	Q9FFI5	7e-78	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	A0A059AW31	1e-102	A0A059AW31_EUCGR; Uncharacterized protein
STRING	XP_010069496.1	1e-103	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G17730.1	3e-89	NAC domain containing protein 57

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]