PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC000293.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NAC

Protein Properties

Length: 231aa MW: 26468.1 Da PI: 7.9721

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC000293.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	149.4	1.8e-46	12	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFh tdeel+ yLk+k+ g++ + +++i+e+d++++ePw+Lp+ k ++ke++f+++ ++ky +++r+ r+t++gyWk tgk++++ls EcC000293.10 12 LPPGFRFHATDEELLLLYLKPKILGQPeEHYSNIIPEIDVCESEPWQLPAmfDRKFNRKELFFYCRVKRKYVNSRRSDRTTRAGYWKVTGKERAILS 108 79***********************4444567***********62333447789********************************* PP NAM 95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++e+ g+kktLvfy+gr p+g++t+Wvmhey+l EcC000293.10 109 EdTNEQLGIKKTLVFYEGRVPQGKRTNWVMHEYHL 143 977889**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.72E-49	10	168	IPR003441	NAC domain
PROSITE profile	PS51005	50.492	12	168	IPR003441	NAC domain
Pfam	PF02365	1.6E-23	13	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MEDTISEVMG LLPPGFRFHA TDEELLLLYL KPKILGQPEE HYSNIIPEID VCESEPWQLP 60 AMFDRKFNRK ELFFYCRVKR KYVNSRRSDR TTRAGYWKVT GKERAILSED TNEQLGIKKT 120 LVFYEGRVPQ GKRTNWVMHE YHLNSKFLGG NHAKGEMLPY VACRIKNKKD KKLTMGHAPA 180 ISPEVYSSSP LTSASNVSDP PVNQEGDLLS FCNTPNSEVV DNQRAADTQP E

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-33	12	169	17	166	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-33	12	169	17	166	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-33	12	169	17	166	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-33	12	169	17	166	NO APICAL MERISTEM PROTEIN
3swm_A	4e-33	12	169	20	169	NAC domain-containing protein 19
3swm_B	4e-33	12	169	20	169	NAC domain-containing protein 19
3swm_C	4e-33	12	169	20	169	NAC domain-containing protein 19
3swm_D	4e-33	12	169	20	169	NAC domain-containing protein 19
3swp_A	4e-33	12	169	20	169	NAC domain-containing protein 19
3swp_B	4e-33	12	169	20	169	NAC domain-containing protein 19
3swp_C	4e-33	12	169	20	169	NAC domain-containing protein 19
3swp_D	4e-33	12	169	20	169	NAC domain-containing protein 19
4dul_A	4e-33	12	169	17	166	NAC domain-containing protein 19
4dul_B	4e-33	12	169	17	166	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010029939.1	1e-172	PREDICTED: protein NTM1-like 9
TrEMBL	A0A059DCT8	1e-118	A0A059DCT8_EUCGR; Uncharacterized protein
STRING	XP_010029939.1	1e-172	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM190	28	276

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35580.1	2e-44	NAC transcription factor-like 9