PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC000293.20

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NAC

Protein Properties

Length: 167aa MW: 20159.1 Da PI: 8.0963

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC000293.20	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	131	8.7e-41	12	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklel.eevikevdiykvePwdLpkkvka..eekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lpp frFh tdeel+ yLk+k+ g++ +l ++i+e+d++++ePw+Lp ++++ +++e++f+++ ++++ ++ r+nr+t++gyWk tgkd+++++ EcC000293.20 12 LPPQFRFHATDEELLLLYLKPKILGQPGHLyYNIIPEIDVCEFEPWQLPDMFDHmfNRRELFFYCRVKRNHLNSWRSNRTTRAGYWKVTGKDRAIMR 108 6899*********************5551567***********5333333778*********************************9 PP NAM 95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++e++g+kktLvf +gr + ++t+Wvm ey+l EcC000293.20 109 EdTNEQIGIKKTLVFCEGRMANVKRTNWVMYEYHL 143 977889**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.8E-44	9	150	IPR003441	NAC domain
PROSITE profile	PS51005	42.03	12	165	IPR003441	NAC domain
Pfam	PF02365	2.0E-21	13	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
MEDTIPEAMR LLPPQFRFHA TDEELLLLYL KPKILGQPGH LYYNIIPEID VCEFEPWQLP 60 DMFDHMFNRR ELFFYCRVKR NHLNSWRSNR TTRAGYWKVT GKDRAIMRED TNEQIGIKKT 120 LVFCEGRMAN VKRTNWVMYE YHLNSEHLGD NHNKGEVTFW LSFIRTT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-30	1	143	6	142	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-30	1	143	6	142	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-30	1	143	6	142	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-30	1	143	6	142	NO APICAL MERISTEM PROTEIN
3swm_A	4e-30	1	143	9	145	NAC domain-containing protein 19
3swm_B	4e-30	1	143	9	145	NAC domain-containing protein 19
3swm_C	4e-30	1	143	9	145	NAC domain-containing protein 19
3swm_D	4e-30	1	143	9	145	NAC domain-containing protein 19
3swp_A	4e-30	1	143	9	145	NAC domain-containing protein 19
3swp_B	4e-30	1	143	9	145	NAC domain-containing protein 19
3swp_C	4e-30	1	143	9	145	NAC domain-containing protein 19
3swp_D	4e-30	1	143	9	145	NAC domain-containing protein 19
4dul_A	3e-30	1	143	6	142	NAC domain-containing protein 19
4dul_B	3e-30	1	143	6	142	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:18443413, PubMed:24329768). Calmodulin-regulated transcriptional repressor. Binds several synthetic promoters with randomly selected binding sites (PubMed:17947243). Functions synergistically with SNI1 as negative regulator of pathogen-induced PR1 expression and basal resistance to a virulent strain of P.syringae. Binds directly to the promoter of the PR1 gene (PubMed:22826500). Acts as positive regulator of innate immunity. Involved in the effector-triggered immunity (ETI) induction of immunity-related gene expression (PubMed:24329768). Mediates osmotic stress signaling in leaf senescence by up-regulating senescence-associated genes (PubMed:18443413). {ECO:0000269\|PubMed:17947243, ECO:0000269\|PubMed:18443413, ECO:0000269\|PubMed:22826500, ECO:0000269\|PubMed:24329768}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010029940.1	1e-114	PREDICTED: NAC transcription factor 29
Swissprot	F4JN35	4e-34	NTL9_ARATH; Protein NTM1-like 9
TrEMBL	A0A059DBY1	5e-78	A0A059DBY1_EUCGR; Uncharacterized protein
STRING	XP_010029940.1	1e-113	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35580.1	1e-33	NAC transcription factor-like 9

Publications ? help Back to Top
Zheng XY, et al. Spatial and temporal regulation of biosynthesis of the plant immune signal salicylic acid. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(30): p. 9166-73 [PMID:26139525] Guo T, et al. Lamin-like Proteins Negatively Regulate Plant Immunity through NAC WITH TRANSMEMBRANE MOTIF1-LIKE9 and NONEXPRESSOR OF PR GENES1 in Arabidopsis thaliana. Mol Plant, 2017. 10(10): p. 1334-1348 [PMID:28943325]