PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC000566.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HSF
Protein Properties Length: 358aa    MW: 40265.9 Da    PI: 4.6264
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC000566.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind107.51.1e-33121032102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k++ei+ed++++ ++swse  nsf+v+d ++fa ++Lpk+Fkh nf+SF+RQLn+YgF+kv+ ++         weF+++ F  g+++ll++ik
  EcC000566.10  12 FLTKTFEIVEDPATDPIVSWSEARNSFIVWDAHQFAATLLPKHFKHGNFSSFIRQLNTYGFRKVDPDR---------WEFANEGFLGGQRHLLKTIK 99 
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+++
  EcC000566.10 100 RRRN 103
                   *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.6E-368101IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.04E-338101IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.0E-598101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-181235IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.6E-3012101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-185062IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405175IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-186375IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0010200Biological Processresponse to chitin
GO:0010286Biological Processheat acclimation
GO:0034605Biological Processcellular response to heat
GO:0034620Biological Processcellular response to unfolded protein
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MEGLGEAGPP PFLTKTFEIV EDPATDPIVS WSEARNSFIV WDAHQFAATL LPKHFKHGNF  60
SSFIRQLNTY GFRKVDPDRW EFANEGFLGG QRHLLKTIKR RRNVLHNPRQ PGGACVELGH  120
YGLDSELERL RRDRGLLMAE VARLRQEQEQ SRDHIFAMEQ RIQRTERKQQ QMLAFLAKAC  180
NNSSFIQQLV QRNARGRDIR GVEIGHKRRL TATPSLENLQ DEVTVAALGH GGARDSAIPM  240
QEEMVTLESE MQTMFSAALD DESSSDVNEL SAAPVPATRG GNTDAVNQTI LEELLSEDLM  300
TGNPEEEILV GDQPEIDMEA EDLVPGRTNA SEESQDLSQL EAVTPSSSLQ QDKFMEEW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-26310117129Heat shock factor protein 1
5d5v_B4e-26310117129Heat shock factor protein 1
5d5v_D4e-26310117129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
194100LKTIKRR
2128133RLRRDR
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010047357.10.0PREDICTED: heat shock factor protein HSF30
SwissprotP411521e-120HSF30_SOLPE; Heat shock factor protein HSF30
TrEMBLA0A059CMT10.0A0A059CMT1_EUCGR; Uncharacterized protein
STRINGXP_010047357.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM116722732
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-101heat shock transcription factor A2
Publications ? help Back to Top
  1. Scharf KD,Rose S,Thierfelder J,Nover L
    Two cDNAs for tomato heat stress transcription factors.
    Plant Physiol., 1993. 102(4): p. 1355-6
    [PMID:8278556]