PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC000949.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

C2H2

Protein Properties

Length: 222aa MW: 24635.8 Da PI: 6.0244

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC000949.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.5	0.0009	192	208	1	17
EEETTTTEEESSHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLk 17 + C +C+k+F+r n++ EcC000949.10 192 FACAICSKTFNRYNNMQ 208 78*********988765 PP

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MGFRDYLATG KEEPCHQPPT FIEWLKPSIS TSSPSSSSSS CLTEPVHLAK PSTFVDSPNS 60 LHQQQQQEQR FLRETIQCLP LLSKLSETKS LKQEEGDEEE VTVVGEGGER QHGVGELRAP 120 NVAVGLHIGL PLGGVDCGYG DNLEKSKHGF DELLIKEAVH KRNLLHGYSG FNAESRFWIP 180 TPAQILVGPM QFACAICSKT FNRYNNMQVI NSLIDWSTVI FH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010045228.1	1e-132	PREDICTED: zinc finger protein WIP3
TrEMBL	A0A059DB02	1e-131	A0A059DB02_EUCGR; Uncharacterized protein
STRING	XP_010045228.1	1e-131	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM239	28	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08290.1	3e-16	WIP domain protein 3