PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC001020.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

Trihelix

Protein Properties

Length: 754aa MW: 81400.5 Da PI: 5.4505

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC001020.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	95.5	4.9e-30	52	136	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+++r+em+ ++r++ lk+plWe+vs+k+ e g++rs+k+Ckek+en++k+yk++keg+ +r ++ +t+++f++lea EcC001020.10 52 RWPRQETLELLRIRSEMDAAFRDATLKGPLWEDVSRKLGELGYRRSAKKCKEKFENVHKYYKRTKEGRAGR--QDGKTYKFFSELEA 136 8******************************************************************98..56667****985 PP
2	trihelix	105.6	3.5e-33	470	555	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev aLi++r+ +e+r++++ k+plWee+s+ m++ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+ +tcpyf++l+a EcC001020.10 470 RWPKVEVIALIKLRSGLESRYQEAGPKGPLWEEISAGMARMGYKRSAKRCKEKWENINKYFKKVKESNKKR-PEDAKTCPYFHELDA 555 8*******************************************************************8.99999******85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0019	49	111	IPR001005	SANT/Myb domain
CDD	cd12203	6.97E-28	51	116	No hit	No description
PROSITE profile	PS50090	6.69	51	109	IPR017877	Myb-like domain
Pfam	PF13837	2.7E-20	51	137	No hit	No description
PROSITE profile	PS50090	6.69	463	527	IPR017877	Myb-like domain
SMART	SM00717	0.011	467	529	IPR001005	SANT/Myb domain
Pfam	PF13837	4.0E-23	469	556	No hit	No description
CDD	cd12203	8.79E-30	470	534	No hit	No description
SuperFamily	SSF101447	7.06E-5	606	616	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 754 aa Download sequence Send to blast
MVVEEASPIS SRPPAPSGLD EFLPLSGGDM DALAAAAAAD VGGSSGGGGG NRWPRQETLE 60 LLRIRSEMDA AFRDATLKGP LWEDVSRKLG ELGYRRSAKK CKEKFENVHK YYKRTKEGRA 120 GRQDGKTYKF FSELEALHNT AAGATVGMSA ASSGGGAASG TAALGGLSVP PVSIGISFAN 180 PVPISTVRGQ PPVLAHPPPH THHIFAPTTA PGLATRPAAT AAMSASPMGM IFSSNTSSSS 240 GRSEEDDDDE EDEEEGEPST TGSSRKRKRG PGETSGSGGG SRRKMMELFE GLMRQVMQKQ 300 EEMQKRFFEA IEKREQDRLI REEAWRRQEM NRLARENEIA AQERAASASR DAAIVSFLQK 360 ITGQTIHLPT MPATMLATVT TSVPPLSQTP LPKTQVRPTH AAPHPQPPMP PPPTYQEQPQ 420 QQRQNIEVVT HPLPASTGII MAVPEQQVPP QSQELILSGG SGGEPSSSSR WPKVEVIALI 480 KLRSGLESRY QEAGPKGPLW EEISAGMARM GYKRSAKRCK EKWENINKYF KKVKESNKKR 540 PEDAKTCPYF HELDALYRKK ELGGGGGGGA TSGAAATSGS MGFRAEPSPS TTNLEARPVI 600 AQDQPPPPPP PPPPPPAAPA QAGEPERKDG GDNSGAQERT VEEGNGGSLK KPEDTVKELI 660 GQGQHQNQHL DSDQQHLRVN SSNYNDKKME EGDSDNIEDQ EENELEEDDE ENDEDEELEE 720 ERKMAYKIEF QRPNASAPPN GGGNGAPSFL AMVQ

Sequence ? help Back to Top

Protein Sequence Length: 754 aa Download sequence Send to blast

MVVEEASPIS SRPPAPSGLD EFLPLSGGDM DALAAAAAAD VGGSSGGGGG NRWPRQETLE  60
LLRIRSEMDA AFRDATLKGP LWEDVSRKLG ELGYRRSAKK CKEKFENVHK YYKRTKEGRA  120
GRQDGKTYKF FSELEALHNT AAGATVGMSA ASSGGGAASG TAALGGLSVP PVSIGISFAN  180
PVPISTVRGQ PPVLAHPPPH THHIFAPTTA PGLATRPAAT AAMSASPMGM IFSSNTSSSS  240
GRSEEDDDDE EDEEEGEPST TGSSRKRKRG PGETSGSGGG SRRKMMELFE GLMRQVMQKQ  300
EEMQKRFFEA IEKREQDRLI REEAWRRQEM NRLARENEIA AQERAASASR DAAIVSFLQK  360
ITGQTIHLPT MPATMLATVT TSVPPLSQTP LPKTQVRPTH AAPHPQPPMP PPPTYQEQPQ  420
QQRQNIEVVT HPLPASTGII MAVPEQQVPP QSQELILSGG SGGEPSSSSR WPKVEVIALI  480
KLRSGLESRY QEAGPKGPLW EEISAGMARM GYKRSAKRCK EKWENINKYF KKVKESNKKR  540
PEDAKTCPYF HELDALYRKK ELGGGGGGGA TSGAAATSGS MGFRAEPSPS TTNLEARPVI  600
AQDQPPPPPP PPPPPPAAPA QAGEPERKDG GDNSGAQERT VEEGNGGSLK KPEDTVKELI  660
GQGQHQNQHL DSDQQHLRVN SSNYNDKKME EGDSDNIEDQ EENELEEDDE ENDEDEELEE  720
ERKMAYKIEF QRPNASAPPN GGGNGAPSFL AMVQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specific DNA sequence. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00244	DAP	Transfer from AT1G76890	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010054910.2	0.0	PREDICTED: trihelix transcription factor GTL1, partial
Swissprot	Q39117	6e-72	TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBL	A0A059CIU7	0.0	A0A059CIU7_EUCGR; Uncharacterized protein
STRING	XP_010054910.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6226	27	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	2e-46	Trihelix family protein