PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC001131.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family LBD
Protein Properties Length: 217aa    MW: 24342.6 Da    PI: 6.6999
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC001131.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260119.42.1e-37101101101
        DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                   aCa+Ck++rrkC k+C+lapyfpa+qpk f+n+h+lFG+sn++k+lk++p++ +++am+s+++e+++ra+ Pv+G++  i++l  ql+q+ +el+++
  EcC001131.20  10 ACAVCKFQRRKCHKECPLAPYFPADQPKMFQNAHRLFGVSNITKILKQAPPDLKQEAMQSVIFESNMRAQYPVHGCCWYIRRLLCQLHQVTEELQHV 106
                   7**********************************************************************************************99 PP

        DUF260  98 keel 101
                   ++++
  EcC001131.20 107 NTQI 110
                   9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.7739110IPR004883Lateral organ boundaries, LOB
PfamPF031952.7E-3510107IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009556Biological Processmicrosporogenesis
GO:0009786Biological Processregulation of asymmetric cell division
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MTIKGGTSQA CAVCKFQRRK CHKECPLAPY FPADQPKMFQ NAHRLFGVSN ITKILKQAPP  60
DLKQEAMQSV IFESNMRAQY PVHGCCWYIR RLLCQLHQVT EELQHVNTQI AMCRDQVSAS  120
ASPSHYPPPP ELQLGNVHAD AVPTRQSFPG VFVNGESTKQ SIMSQQPYNY EPENTSHVGA  180
AQPNLASLPE LLMNYGADVF SYEDVPFDTI TIDKEES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A9e-2761107111LOB family transfactor Ramosa2.1
5ly0_B9e-2761107111LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010030769.11e-165PREDICTED: LOB domain-containing protein 27
SwissprotQ9STS63e-38LBD27_ARATH; LOB domain-containing protein 27
TrEMBLA0A059AQV51e-164A0A059AQV5_EUCGR; Uncharacterized protein
STRINGXP_010030769.11e-164(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63032746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.11e-40LOB domain-containing protein 27
Publications ? help Back to Top
  1. Kim MJ,Kim M,Kim J
    Combinatorial interactions between LBD10 and LBD27 are essential for male gametophyte development in Arabidopsis.
    Plant Signal Behav, 2015. 10(8): p. e1044193
    [PMID:26252070]
  2. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]