PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC001485.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 439aa    MW: 49286.9 Da    PI: 6.7368
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC001485.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.56.2e-08318365448
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      WT  E  +lvd++ ++G g W+ I r +      Rt+ +++++w+++l
     EcC001485.20 318 WTLAEVTKLVDGISEYGAGKWTDIKRLFFatsAYRTPIDLRDKWRNLL 365
                      ********************************99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.87310369IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.8E-11310368IPR009057Homeodomain-like
SuperFamilySSF466891.12E-15312401IPR009057Homeodomain-like
SMARTSM007176.1E-7314367IPR001005SANT/Myb domain
CDDcd116606.39E-18316366No hitNo description
PfamPF139213.2E-6318368No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006166Biological Processpurine ribonucleoside salvage
GO:0003677Molecular FunctionDNA binding
GO:0004001Molecular Functionadenosine kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
VKEESLVPPI EDETTEVEHL LEEPENDYFS VDGVFRSNEE NAGKFLDSKD FHNEVEFSLR  60
STSCGLDSYI TPEGGDALNL GVHMDLAQEV SALDVGLCDG LRLGNSSTDS HSPGYSGSSN  120
GAIEMSESSD GNNPELNCND DSSQGRIGPE DSNCLSRDSV KVDQLQNSPD CVVSLLSSRN  180
KNNPAAESRS IACLTQKRQR KPTRRYIEES ANMKSSHLKP EQKPFAVDSK KHVIFRTPDQ  240
LHNVESRELI SVPVKDCPEE TSIKTLPQPH LQGRRLKKRK PLLEDDLGEY SSASESEDDF  300
VERRPKKGID RRKHQRMWTL AEVTKLVDGI SEYGAGKWTD IKRLFFATSA YRTPIDLRDK  360
WRNLLRASQA LKSHKEEAEE NEKNAVRPLP KSLLRRVCEL ATIHPYPRSY NSRSRPVPTA  420
KKGASLSSNG RNVRRRICP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1273279RRLKKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018721187.10.0PREDICTED: uncharacterized protein LOC104425075 isoform X2
TrEMBLA0A059A1C80.0A0A059A1C8_EUCGR; Uncharacterized protein
STRINGXP_010035961.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92001927
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.22e-23TRF-like 6