PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC001560.40

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

M-type_MADS

Protein Properties

Length: 160aa MW: 17951.9 Da PI: 6.2783

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC001560.40	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	32	1.5e-10	2	33	19	50
HHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 19 gilKKAeELSvLCdaevaviifsstgklyeys 50 gi KKA+EL +LC+ ev v ifs++gk y ++ EcC001560.40 2 GIYKKASELVTLCGSEVGVAIFSPSGKPYSFA 33 9**************************99997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	13.484	1	36	IPR002100	Transcription factor, MADS-box
SMART	SM00432	0.0022	1	35	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.3E-12	1	32	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	8.63E-14	1	52	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
SGIYKKASEL VTLCGSEVGV AIFSPSGKPY SFAHPSIDSI ATRFRNRNHP QNVGANNLVE 60 SYRRLRIDEL NQQHDELVDQ INDDKARGKT LKQMTEERDG EGWWEAPIEE LSLEELKQMK 120 ARMVELRRNL QGSITVRNQG APSSEGETSN QRNNPSATIA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010059075.1	1e-117	PREDICTED: agamous-like MADS-box protein AGL61
TrEMBL	A0A058ZUL3	1e-114	A0A058ZUL3_EUCGR; Uncharacterized protein
STRING	XP_010059075.1	1e-116	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	1e-31	AGAMOUS-like 61