PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC001631.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 127aa    MW: 14585.6 Da    PI: 9.123
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC001631.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.84.1e-1314121297
                   EEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTH.HHHHHHHT--TT-EEEEEE- CS
            B3   2 fkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesg.rsWevkliyrkksgryvltkGW.keFvkangLkegDfvvFkld 85 
                   +k lt+sd + ++rl + ++f+++h           + ++ ++ +++++d++   + ++ + ++ +sg+yvl++GW keFvk  gL +gD v ++  
  EcC001631.10  14 KKRLTQSDLGHLSRLLIGRDFVKSHflrwmseetvrQVESGRGADVIVRDLDTcSEHRLVFVFWASSGSYVLKGGWiKEFVKRRGLAAGDEVGIYW- 109
                   5889************************99888887555568999*****8887777788888*************999************99995. PP

                   SS.SEE..EEEEE CS
            B3  86 gr.sefelvvkvf 97 
                    + s  e++++++
  EcC001631.10 110 -EpSASEFHFSLL 121
                   .445555577665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.08E-1612121IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.003413124IPR003340B3 DNA binding domain
CDDcd100173.39E-1713121No hitNo description
Gene3DG3DSA:2.40.330.102.1E-1614124IPR015300DNA-binding pseudobarrel domain
PfamPF023626.1E-1015119IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
STELTLLFDP YKIKKRLTQS DLGHLSRLLI GRDFVKSHFL RWMSEETVRQ VESGRGADVI  60
VRDLDTCSEH RLVFVFWASS GSYVLKGGWI KEFVKRRGLA AGDEVGIYWE PSASEFHFSL  120
LHRANQA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010042934.15e-89PREDICTED: putative B3 domain-containing protein At1g78640
RefseqXP_018729963.11e-89PREDICTED: B3 domain-containing protein At2g33720-like
TrEMBLA0A059C5A73e-88A0A059C5A7_EUCGR; Uncharacterized protein
STRINGXP_010042934.12e-88(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM456952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33720.13e-29B3 family protein