PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC001726.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 200aa    MW: 22442.5 Da    PI: 4.5704
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC001726.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.71.3e-081232447
                     HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqky 47
                     W++Ia +++ gRt++++k++w++ 
     EcC001726.10  1 WSLIAGRLP-GRTDNEIKNHWNTN 23
                     *********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.71E-6129IPR009057Homeodomain-like
CDDcd001671.66E-6124No hitNo description
PfamPF002493.4E-6124IPR001005SANT/Myb domain
PROSITE profilePS5129416.972128IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-10124IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
WSLIAGRLPG RTDNEIKNHW NTNLSKKVQD ETHQNPVKRS NELEPRSETS KEESPSRLEP  60
HPVIRTKAVR CTRVILPPPL MDQVASKATS VRNSNSETSS YTSSRQSDLS SHFLADFNID  120
DLLMSDEAQN LDSCFPLEGE KVNCYPSNFT LPAHDDAGCI RSEGLDRWRD NDEPFQPNGS  180
FDFNSLASFL NSDDGCGLDE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010049530.11e-143PREDICTED: transcription factor TT2
TrEMBLA0A059CUV11e-142A0A059CUV1_EUCGR; Uncharacterized protein
STRINGXP_010049530.11e-143(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.12e-15MYB family protein