PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC002228.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 176aa    MW: 20132.8 Da    PI: 5.9469
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC002228.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.95.1e-15118818100
                   --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-SS CS
            B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrks 100
                   +pk+f++++g++   s  + l+ + g +W vkl  +k++++ ++l kGW++F +   +  g  +vFk++g+s f  +v +f+ks
  EcC002228.10  11 IPKSFLRRYGKD--FSGLVLLKVPGGSTWPVKL--EKSDDGkVWLWKGWRGFMEHYSIGHGHLLVFKYEGDSVF--HVIIFDKS 88 
                   9********977..77799**************..8887777****************************9999..**999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.098188IPR003340B3 DNA binding domain
SMARTSM010191.1E-6388IPR003340B3 DNA binding domain
CDDcd100176.97E-15386No hitNo description
SuperFamilySSF1019363.92E-20888IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.6E-201088IPR015300DNA-binding pseudobarrel domain
PfamPF023622.6E-121087IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MLVWRFGFSG IPKSFLRRYG KDFSGLVLLK VPGGSTWPVK LEKSDDGKVW LWKGWRGFME  60
HYSIGHGHLL VFKYEGDSVF HVIIFDKSAS EIDYPSSIES DMSSPEEEFI SRKEEDVMEI  120
EDSEGSMPCS QPSSYRSSRE YGVPSHLAAF ELASEFKSDH PFFKVVVQPS YVRKSL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010052028.11e-114PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X1
RefseqXP_010052029.11e-114PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X2
RefseqXP_010052031.11e-114PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X3
TrEMBLA0A059CD821e-111A0A059CD82_EUCGR; Uncharacterized protein
STRINGXP_010052028.11e-113(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-21B3 family protein