PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC002231.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 455aa    MW: 50007.2 Da    PI: 8.7729
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC002231.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.92.2e-07258280123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   + C++Cgk F+r  nL+ H+r H
  EcC002231.30 258 HYCQICGKGFKRDANLRMHMRAH 280
                   68*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.24E-6256283No hitNo description
SMARTSM003550.0028258280IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.0E-6258284IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.632258285IPR007087Zinc finger, C2H2
PROSITE patternPS000280260280IPR007087Zinc finger, C2H2
SMARTSM0035577319352IPR015880Zinc finger, C2H2-like
SMARTSM0035522357379IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006412Biological Processtranslation
GO:0008219Biological Processcell death
GO:0009816Biological Processdefense response to bacterium, incompatible interaction
GO:0009908Biological Processflower development
GO:0010154Biological Processfruit development
GO:0015996Biological Processchlorophyll catabolic process
GO:0055114Biological Processoxidation-reduction process
GO:0000786Cellular Componentnucleosome
GO:0005840Cellular Componentribosome
GO:0009534Cellular Componentchloroplast thylakoid
GO:0009941Cellular Componentchloroplast envelope
GO:0003677Molecular FunctionDNA binding
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0010277Molecular Functionchlorophyllide a oxygenase [overall] activity
GO:0032441Molecular Functionpheophorbide a oxygenase activity
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
GO:0051537Molecular Function2 iron, 2 sulfur cluster binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MPLPPGASSC FPSASQGLQM YGVTGHEDIG VVTSSSMDNN AASSTSPADT HSNTLLYNLS  60
LLKDKVHQVQ SLISVLVSPP QIAGQSTATT SMAIASMVTS IQELIVAASS MMYTCQQMSN  120
ASAPSADNPT SRQELIPQQQ EQQQQQQHRI KPVGHGGLLS HHHSQPTGIY ASDQTFDWFA  180
DNSYVSSPAM GNNNSGNSNR NNSSRPGQNG RDQALPQPCG GQRGHNEGST QGTSLKSGSS  240
NFDIIELDAS ELLAKYTHYC QICGKGFKRD ANLRMHMRAH GDEYKTSSAL SNPLKNSSGS  300
NNSIGADEKE CPMKTPRKYS CPQEGCRWNQ KHAKFQPLKS MICVKNHYKR SHCPKMYVCK  360
RCNRKQFSVL SDLRTHEKHC GDLKWQCSCG TTFSRKDKLM GHVTLFVGHX XXXXXXXXXX  420
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXG PIGLV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010045298.10.0PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1
RefseqXP_010045299.10.0PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBLA0A059DA800.0A0A059DA80_EUCGR; Uncharacterized protein
STRINGXP_010045298.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-106C2H2 family protein