PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC002231.60
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 348aa    MW: 35739.3 Da    PI: 7.135
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC002231.60genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.0016163185123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   y+C+ C+++F++   L  H  +H
  EcC002231.60 163 YECKTCSRVFPSFQALGGHRASH 185
                   99**********99999998887 PP
2zf-C2H212.20.00056244266123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   ++C++Cg  F +   L  H+r+H
  EcC002231.60 244 HECNICGSEFASGQALGGHMRRH 266
                   78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.9E-13162187IPR007087Zinc finger, C2H2
SuperFamilySSF576678.61E-8162185No hitNo description
SMARTSM003550.12163185IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.367163190IPR007087Zinc finger, C2H2
PROSITE patternPS000280165185IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.1E-4227267IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.61E-8239266No hitNo description
SMARTSM003550.037244266IPR015880Zinc finger, C2H2-like
PfamPF139125.2E-11244268IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.094244271IPR007087Zinc finger, C2H2
PROSITE patternPS000280246266IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006412Biological Processtranslation
GO:0008219Biological Processcell death
GO:0009816Biological Processdefense response to bacterium, incompatible interaction
GO:0009908Biological Processflower development
GO:0010154Biological Processfruit development
GO:0015996Biological Processchlorophyll catabolic process
GO:0055114Biological Processoxidation-reduction process
GO:0000786Cellular Componentnucleosome
GO:0005840Cellular Componentribosome
GO:0009534Cellular Componentchloroplast thylakoid
GO:0009941Cellular Componentchloroplast envelope
GO:0003677Molecular FunctionDNA binding
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0010277Molecular Functionchlorophyllide a oxygenase [overall] activity
GO:0032441Molecular Functionpheophorbide a oxygenase activity
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
GO:0051537Molecular Function2 iron, 2 sulfur cluster binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MDLEYPEEFL GGAHDHHSQI SKGKRTKRQR PASPSGGCVG GGGGGGASSM TSCSSSGGGG  60
GRGGGGGGGG GGDASSALSP SSSGNNVVYS SAEEEEEDLA NCLILLAQGD GRPRRVDCDD  120
HDGGKMGIFS SKKFSEVVAT ATAAAAAAAD AGVATGRAGF YVYECKTCSR VFPSFQALGG  180
HRASHKKPKS TADPDQKIKP STVVLGLDAI DDEDEGHSGK ISPPLSAHVA SHKGLHQASK  240
PKIHECNICG SEFASGQALG GHMRRHRSAP PPTATSADAT SPTNPPAAAA ITTEKSRNIL  300
SLDLNLPAPT EEDHHHQAHR RRENSKFQFA TSQQPIMLAS PALVDCHY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15967GGRGGGGGG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010045301.20.0PREDICTED: zinc finger protein ZAT5
TrEMBLA0A059DAH20.0A0A059DAH2_EUCGR; Uncharacterized protein
STRINGXP_010045301.11e-178(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.13e-40C2H2 family protein