PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC002764.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

M-type_MADS

Protein Properties

Length: 75aa MW: 8717.26 Da PI: 10.1969

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC002764.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	97.6	5.2e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr g+lKKA+E+SvLCda+va+i+fs++gkl+ey++ EcC002764.10 9 KRIENKINRQVTFSKRRCGLLKKAHEISVLCDADVALIVFSTKGKLFEYAT 59 79***********************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	31.427	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	6.3E-39	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.14E-29	2	70	IPR002100	Transcription factor, MADS-box
CDD	cd00265	3.28E-36	2	69	No hit	No description
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.3E-31	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.1E-26	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.3E-31	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.3E-31	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 75 aa Download sequence Send to blast
MGRGRVQLKR IENKINRQVT FSKRRCGLLK KAHEISVLCD ADVALIVFST KGKLFEYATD 60 CWYVLSARYI CFSRD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	1e-20	1	65	1	66	MEF2C
5f28_B	1e-20	1	65	1	66	MEF2C
5f28_C	1e-20	1	65	1	66	MEF2C
5f28_D	1e-20	1	65	1	66	MEF2C
6byy_A	1e-20	1	65	1	66	MEF2 CHIMERA
6byy_B	1e-20	1	65	1	66	MEF2 CHIMERA
6byy_C	1e-20	1	65	1	66	MEF2 CHIMERA
6byy_D	1e-20	1	65	1	66	MEF2 CHIMERA
6bz1_A	1e-20	1	65	1	66	MEF2 CHIMERA
6bz1_B	1e-20	1	65	1	66	MEF2 CHIMERA
6bz1_C	1e-20	1	65	1	66	MEF2 CHIMERA
6bz1_D	1e-20	1	65	1	66	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010037260.1	2e-37	PREDICTED: truncated transcription factor CAULIFLOWER A isoform X1
Refseq	XP_010037261.1	1e-37	PREDICTED: agamous-like MADS-box protein AGL8 homolog isoform X2
Swissprot	O22328	4e-35	AGL8_SOLCO; Agamous-like MADS-box protein AGL8 homolog
TrEMBL	A0A0V0H919	6e-37	A0A0V0H919_SOLCH; Putative agamous-like MADS-box protein AGL8-like
STRING	XP_004172815.1	1e-37	(Cucumis sativus)
STRING	XP_010037260.1	6e-37	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM78	28	413

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60910.1	1e-36	AGAMOUS-like 8