PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC002771.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family WRKY
Protein Properties Length: 187aa    MW: 20795.4 Da    PI: 10.1739
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC002771.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.93.8e-32121178359
                   -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                   D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ edp+++++tYeg+Hnh+
  EcC002771.20 121 DDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEDPSMLIVTYEGDHNHP 178
                   99***********************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105333.1E-1872117IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.0E-34107179IPR003657WRKY domain
PROSITE profilePS5081130.274114180IPR003657WRKY domain
SuperFamilySSF1182907.45E-28117179IPR003657WRKY domain
SMARTSM007741.9E-38119179IPR003657WRKY domain
PfamPF031068.9E-28121178IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006508Biological Processproteolysis
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0008234Molecular Functioncysteine-type peptidase activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
QQQMKHQAEM MYHRSNSGIS LNFDSSSCTP TISSTRSFIS SLSIDGSVAN LDANAFHLIG  60
AARSSDQNSQ HKRKCSGRGE DGSMKCGSSS RCHCSKKRKH RVKRSIKVPA ISNKLADIPP  120
DDYSWRKYGQ KPIKGSPHPR GYYKCSSMRG CPARKHVERC LEDPSMLIVT YEGDHNHPRV  180
PSQSANT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-21112181775WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00284DAPTransfer from AT2G30590Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010038933.11e-137PREDICTED: probable WRKY transcription factor 21
SwissprotO043362e-98WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLA0A059D2M11e-136A0A059D2M1_EUCGR; Uncharacterized protein
STRINGXP_010038933.11e-136(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35672861
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.11e-70WRKY DNA-binding protein 21